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08/08: gnu: Add r-sccustomize.
From: |
guix-commits |
Subject: |
08/08: gnu: Add r-sccustomize. |
Date: |
Mon, 4 Jul 2022 07:51:26 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit a0125732ef67a4bebf142a14d5ec69b172068f3f
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Jul 4 13:25:03 2022 +0200
gnu: Add r-sccustomize.
* gnu/packages/bioinformatics.scm (r-sccustomize): New variable.
---
gnu/packages/bioinformatics.scm | 58 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 58 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6a24e65e34..285343f632 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7167,6 +7167,64 @@ sequence.")
auROC analysis.")
(license license:gpl3))))
+(define-public r-sccustomize
+ (let ((commit "8414d1f5fb32277855b0619191a568932b7baeb0")
+ (revision "1"))
+ (package
+ (name "r-sccustomize")
+ (version (git-version "0.7.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/samuel-marsh/scCustomize";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1wcgfq7lx83a2kf8pjbw524gdvxf351n08cwd5wzmmy57kf4knbj"))))
+ (properties `((upstream-name . "scCustomize")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-circlize
+ r-colorway
+ r-cowplot
+ r-data-table
+ r-dittoseq
+ r-dplyr
+ r-forcats
+ r-ggbeeswarm
+ r-ggplot2
+ r-ggprism
+ r-ggpubr
+ r-ggrastr
+ r-ggrepel
+ r-glue
+ r-janitor
+ r-magrittr
+ r-matrix
+ r-paletteer
+ r-patchwork
+ r-pbapply
+ r-purrr
+ r-remotes
+ r-scales
+ r-scattermore
+ r-seurat
+ r-seuratobject
+ r-stringi
+ r-stringr
+ r-tibble
+ r-tidyr
+ r-tidyselect
+ r-viridis))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/samuel-marsh/scCustomize";)
+ (synopsis "Custom visualization and analyses of single-cell sequencing")
+ (description
+ "This is a collection of functions created and/or curated to aid in the
+visualization and analysis of single-cell data using R.")
+ (license license:gpl3+))))
+
(define-public r-snapatac
(package
(name "r-snapatac")
- branch master updated (31e4eaf52c -> a0125732ef), guix-commits, 2022/07/04
- 01/08: gnu: Add r-colorway., guix-commits, 2022/07/04
- 02/08: gnu: Add r-prismatic., guix-commits, 2022/07/04
- 07/08: gnu: Add r-dittoseq., guix-commits, 2022/07/04
- 04/08: gnu: Add r-janitor., guix-commits, 2022/07/04
- 05/08: gnu: Add r-ggrastr., guix-commits, 2022/07/04
- 03/08: gnu: Add r-paletteer., guix-commits, 2022/07/04
- 08/08: gnu: Add r-sccustomize.,
guix-commits <=
- 06/08: gnu: Add r-ggprism., guix-commits, 2022/07/04