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05/222: build-system/pyproject: Use python-sans-pip-wrapper as default-p
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From: |
guix-commits |
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Subject: |
05/222: build-system/pyproject: Use python-sans-pip-wrapper as default-python. |
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Date: |
Fri, 1 Nov 2024 10:56:12 -0400 (EDT) |
sharlatan pushed a commit to branch python-team
in repository guix.
commit 1a9dc619dde243b46940f0a09b24793e8b2615b9
Author: Lars-Dominik Braun <lars@6xq.net>
AuthorDate: Thu May 11 08:33:02 2023 +0200
build-system/pyproject: Use python-sans-pip-wrapper as default-python.
Also adds python-setuptools and python-wheel to relevant packages,
either to native-inputs or to propagated inputs if the pkg_resources
Python module is loaded at runtime.
* guix/build-system/pyproject.scm (default-python): Default to
python-sans-pip-wrapper.
Change-Id: I2d986c2225114f54459dd6bb360913106e52cdf4
---
gnu/packages/admin.scm | 13 +-
gnu/packages/bioinformatics.scm | 90 +++++++++---
gnu/packages/bootloaders.scm | 3 +
gnu/packages/check.scm | 9 +-
gnu/packages/databases.scm | 12 +-
gnu/packages/digest.scm | 5 +-
gnu/packages/engineering.scm | 11 +-
gnu/packages/fontutils.scm | 19 ++-
gnu/packages/geo.scm | 10 +-
gnu/packages/graph.scm | 13 +-
gnu/packages/graphviz.scm | 4 +-
gnu/packages/license.scm | 17 ++-
gnu/packages/machine-learning.scm | 28 ++--
gnu/packages/monitoring.scm | 5 +-
gnu/packages/package-management.scm | 9 +-
gnu/packages/potassco.scm | 9 +-
gnu/packages/protobuf.scm | 4 +-
gnu/packages/python-build.scm | 3 +-
gnu/packages/python-check.scm | 43 ++++--
gnu/packages/python-compression.scm | 28 ++--
gnu/packages/python-crypto.scm | 25 +++-
gnu/packages/python-science.scm | 22 ++-
gnu/packages/python-web.scm | 63 ++++++---
gnu/packages/python-xyz.scm | 273 ++++++++++++++++++++++++------------
gnu/packages/qt.scm | 4 +-
gnu/packages/rpc.scm | 2 +-
gnu/packages/serialization.scm | 4 +-
gnu/packages/sphinx.scm | 4 +-
gnu/packages/statistics.scm | 14 +-
gnu/packages/terminals.scm | 5 +-
gnu/packages/time.scm | 3 +-
gnu/packages/tor.scm | 4 +-
gnu/packages/tree-sitter.scm | 4 +-
gnu/packages/video.scm | 2 +-
gnu/packages/vim.scm | 8 +-
guix/build-system/pyproject.scm | 7 +-
36 files changed, 555 insertions(+), 224 deletions(-)
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 86f35d49ad..9f6c02508e 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -5010,10 +5010,17 @@ elogind's uaccess feature.")
;; XXX Guix's America/Los_Angeles time zone is somehow broken.
(add-before 'check 'hack-time-zone
(lambda _
- (setenv "TZ" "PST8PDT"))))))
- (native-inputs (list python-pytest))
+ (setenv "TZ" "PST8PDT")
+ (substitute* (find-files "tests" "^test.*\\.py$")
+ (("America/Los_Angeles") "PST8PDT")))))))
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs
- (list python-pygments python-ruamel.yaml python-xmltodict))
+ (list python-pygments
+ python-ruamel.yaml
+ python-xmltodict))
(home-page "https://github.com/kellyjonbrazil/jc";)
(synopsis "Convert the output of command-line tools to JSON")
(description "@code{jc} JSONifies the output of many CLI tools and
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3c1c180b7c..599a734a2b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1885,8 +1885,13 @@ intended to behave exactly the same as the original BWK
awk.")
(base32
"1pm1szyxabhn8jismrj9cjhf88ajgcmm39f0cgf36iagw5qakprl"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-biopython python-six))
- (native-inputs (list python-pytest))
+ (native-inputs
+ (list python-pytest))
+ (propagated-inputs
+ (list python-biopython
+ python-setuptools
+ python-six
+ python-wheel))
(home-page "https://github.com/chapmanb/bcbb/tree/master/gff";)
(synopsis "Read and write GFF files with Biopython integration")
(description
@@ -2010,7 +2015,7 @@ from bokeh.util.dataclasses import entries\n"))
python-tornado-6
python-tqdm
python-umap-learn))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/LooseLab/bulkVis";)
(synopsis "Interactive visualization of bulk RNA-seq data")
(description
@@ -2341,7 +2346,11 @@ biological activities from omics data within a unified
framework.")
python-scikit-learn
python-scipy
python-seaborn))
- (native-inputs (list python-cython python-setuptools-scm))
+ (native-inputs
+ (list python-cython
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/lilab-bcb/demuxEM";)
(synopsis "Analyze cell-hashing/nucleus-hashing data")
(description
@@ -2414,6 +2423,7 @@ from single-cell RNA-sequencing.")
python-numpy
python-pandas
python-scipy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/SegataLab/hclust2/";)
(synopsis "Plotting heat-maps for publications")
(description
@@ -2433,7 +2443,7 @@ to produce high quality figures that can be used in
publications.")
"111q4pzkav26aa3hkgh948wqlyrq7dq6sjml9z63n3blw8s6b0c4"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm))
+ (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs
(list python-humanize python-requests python-six))
(home-page "https://pypi.org/project/htsget/";)
@@ -2533,6 +2543,7 @@ framework enables the use of any LR method with any
resources.")
(build-system pyproject-build-system)
(propagated-inputs
(list python-matplotlib python-numpy python-pandas))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://logomaker.readthedocs.io";)
(synopsis "Package for making Sequence Logos")
(description "Logomaker is a Python package for generating
@@ -2767,7 +2778,8 @@ three prime UTR.")
python-pillow
python-scipy
python-zarr))
- (native-inputs (list python-cython python-setuptools-scm))
+ (native-inputs (list python-cython python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/lilab-bcb/pegasusio";)
(synopsis "Read or write single-cell genomics data")
(description
@@ -2826,7 +2838,7 @@ weight.astype(\"str\") + '\\n')")))))))
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/dpeerlab/PhenoGraph.git";)
(synopsis "Graph-based clustering for high-dimensional single-cell data")
(description
@@ -2857,6 +2869,7 @@ similarities between cells and then identifying
communities in this graph.")
python-numpy
python-pandas
python-seaborn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/biobakery/phylophlan";)
(synopsis
"Phylogenetic analysis of microbial isolates and genomes from
metagenomes")
@@ -2936,6 +2949,8 @@ phylogenetic markers, and can also scale to very large
phylogenies comprising
python-cython
kentutils ; for bedGraphToBigWig
python-six
+ python-setuptools
+ python-wheel
;; For the test suite.
python-pytest
python-psutil))
@@ -3316,6 +3331,7 @@ alignments and perform the following operations:
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
(propagated-inputs (list python-pandas))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/alexomics/read-paf";)
(synopsis "Minimap2 PAF file reader")
(description
@@ -3428,6 +3444,7 @@ sequencing.")
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
(list python-numpy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://biopython.org/";)
(synopsis "Tools for biological computation in Python")
(description
@@ -4487,7 +4504,8 @@ off-target reads for a capture method that targets
CpG-rich region.")
(inputs
(list zlib))
(native-inputs
- (list python-cython python-lzo python-pytest))
+ (list python-cython python-lzo python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/bxlab/bx-python";)
(synopsis "Tools for manipulating biological data")
(description
@@ -4713,6 +4731,8 @@ subgroups.")
(native-inputs
(list python-cython
python-pytest
+ python-setuptools
+ python-wheel
;; Dependencies below are are for tests only.
samtools
bcftools))
@@ -4806,6 +4826,8 @@ UCSC genome browser.")
(native-inputs
`(("python-cython" ,python-cython)
("python-pytest" ,python-pytest)
+ ("python-setuptools" ,python-setuptools)
+ ("python-wheel" ,python-wheel)
("test-data"
,(origin
(method url-fetch)
@@ -5133,7 +5155,8 @@ file formats including SAM/BAM, Wiggle/BigWig, BED,
GFF/GTF, VCF.")
(arguments
(list #:tests? #false)) ;there are none
(native-inputs
- (list python-cython python-pytest python-setuptools-scm))
+ (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(propagated-inputs
(list python-xopen))
(home-page "https://github.com/marcelm/dnaio/";)
@@ -5485,6 +5508,7 @@ gkm-SVM.")
(list python-numpy))
(inputs
(list libbigwig zlib curl))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/dpryan79/pyBigWig";)
(synopsis "Access bigWig files in Python using libBigWig")
(description
@@ -5610,9 +5634,12 @@ Note that this package has been deprecated in favor of
@code{pyfaidx}.")
python-mypy-extensions
python-rdflib
python-requests
- python-ruamel.yaml))
+ python-ruamel.yaml
+ python-setuptools ; For pkg_resources.
+ python-typing-extensions))
(native-inputs
- (list python-black python-pytest python-pytest-runner
python-pytest-xdist))
+ (list python-black python-pytest python-pytest-runner
+ python-wheel))
(home-page "https://github.com/common-workflow-language/schema_salad";)
(synopsis "Schema Annotations for Linked Avro Data (SALAD)")
(description
@@ -5696,6 +5723,7 @@ resources for bioinformatics.")
python-scikit-learn
python-scipy
python-umap-learn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/swolock/scrublet";)
(synopsis "Tool to indentify and remove doublets in single-cell data")
(description "This package provides a tool for identifying and removing
@@ -5861,6 +5889,7 @@ documents.")
python-requests
python-ruamel.yaml
python-schema-salad
+ python-setuptools ; For pkg_resources.
python-shellescape
python-spython
python-typing-extensions
@@ -5874,7 +5903,7 @@ documents.")
python-pytest-cov
python-pytest-mock
python-pytest-runner
- python-pytest-xdist))
+ python-wheel))
(home-page
"https://github.com/common-workflow-language/common-workflow-language";)
(synopsis "Common Workflow Language reference implementation")
@@ -5928,7 +5957,8 @@ CWL descriptions.")
(substitute* "tests/test_datamodel_taxon.py"
(("collections.Iterable")
"collections.abc.Iterable")))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-wheel))
+ (propagated-inputs (list python-setuptools))
(home-page "https://dendropy.org/";)
(synopsis "Library for phylogenetics and phylogenetic computing")
(description
@@ -6747,7 +6777,8 @@ multiple DJU methods.")
(base32
"0cjpzyqz6r4lmiwry2gcxdczwpkhl3lyyjg4s8addln17691ysxk"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-pytest))
+ (propagated-inputs (list python-pytest python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/betteridiot/bamnostic/";)
(synopsis "Tool for binary alignment map, random access and parsing")
(description
@@ -6845,7 +6876,7 @@ analysis tool Scanpy (Genome Biology, 2018).")
python-pyqt
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "http://etetoolkit.org";)
(synopsis "Python environment for phylogenetic tree exploration")
(description
@@ -6866,6 +6897,7 @@ exploration.")
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
(propagated-inputs (list python-matplotlib python-numpy
python-levenshtein))
+ (native-inputs (list python-setuptools python-wheel python-pip))
(home-page "https://github.com/meren/illumina-utils";)
(synopsis "Library and scripts to work with Illumina paired-end data")
(description
@@ -6889,6 +6921,7 @@ Illumina paired-end data (for CASAVA 1.8+).")
(propagated-inputs
(list python-biopython python-matplotlib python-pandas
python-scipy python-seaborn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://widdowquinn.github.io/pyani/";)
(synopsis "Calculate genome-scale average nucleotide identity")
(description
@@ -10560,7 +10593,9 @@ complexity samples.")
(build-system pyproject-build-system)
(native-inputs
(list python-pytest-cov
- python-pytest-runner))
+ python-pytest-runner
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/dib-lab/screed/";)
(synopsis "Short read sequence database utilities")
(description "Screed parses FASTA and FASTQ files and generates databases.
@@ -10902,7 +10937,7 @@ bioinformatics file formats, sequence alignment, and
more.")
(inputs
(list python-biopython python-pygtrie))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/fhcrc/seqmagick";)
(synopsis "Tools for converting and modifying sequence files")
(description
@@ -14097,10 +14132,12 @@ replacement for strverscmp.")
python-requests
python-rich
python-rich-click
+ python-setuptools ; For pkg_resources.
python-simplejson
python-spectra))
(native-inputs
`(("python-pytest" ,python-pytest)
+ ("python-wheel" ,python-wheel)
("tests"
,(let ((commit "c3e7400affe3f3ca996973805797af61b93070ba"))
(origin
@@ -15901,9 +15938,10 @@ using the same syntax.")
python-pydot
python-requests
python-scipy
+ python-setuptools
python-statsmodels
python-xlsxwriter))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-wheel))
(home-page "https://github.com/tanghaibao/goatools";)
(synopsis "Python scripts to find enrichment of GO terms")
(description "Python scripts to find enrichment of GO terms. In addition,
@@ -16019,9 +16057,10 @@ API services.")
python-pysam
python-regex
python-ruamel.yaml
+ python-setuptools
snakemake))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-wheel))
(home-page "https://github.com/caleblareau/mgatk";)
(synopsis "Mitochondrial genome analysis toolkit.")
(description "This package is a Python-based command line interface for
@@ -18262,6 +18301,7 @@ implementation differs in these ways:
python-patsy
python-scikit-learn
python-scipy
+ python-setuptools ; For pkg_resources.
python-seaborn
python-session-info
python-sinfo
@@ -18655,7 +18695,9 @@ bgzipped text file that contains a pair of genomic
coordinates per line.")
python-mock
python-numpy
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-wheel))
+ (propagated-inputs (list python-setuptools))
(home-page "http://mattshirley.com";)
(synopsis "Random access to fasta subsequences")
(description
@@ -18777,7 +18819,7 @@ includes operations like compartment, insulation or
peak calling.")
python-scipy
python-tables))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/deeptools/HiCMatrix/";)
(synopsis "HiCMatrix class for HiCExplorer and pyGenomeTracks")
(description
@@ -19640,6 +19682,7 @@ polymorphisms) and indels with respect to a reference
genome and more.")
;; R packages
r-dnacopy))
(inputs (list r-minimal)) ;for tests
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://cnvkit.readthedocs.org/";)
(synopsis "Copy number variant detection from targeted DNA sequencing")
(description
@@ -21867,7 +21910,9 @@ coordinates between different assemblies.")
(list python-pytest
lsof
inetutils
- openssl))
+ openssl
+ python-setuptools
+ python-wheel))
(inputs (list time))
(propagated-inputs
(list python-apsw
@@ -22371,6 +22416,7 @@ feature is fast retrieval of range queries into numpy
arrays.")
(list python-biopython
python-matplotlib
python-packaging))
+ (native-inputs (list python-setuptools python-wheel))
(home-page
"https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer";)
(synopsis "Plot features from DNA sequences")
diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm
index fcc1088fd6..49016a8367 100644
--- a/gnu/packages/bootloaders.scm
+++ b/gnu/packages/bootloaders.scm
@@ -76,6 +76,7 @@
#:use-module (gnu packages version-control)
#:use-module (gnu packages virtualization)
#:use-module (gnu packages xorg)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (guix build-system gnu)
@@ -778,6 +779,8 @@ tree binary files. These are board description files used
by Linux and BSD.")
pkg-config ;for 'make menuconfig'
python
python-pyelftools
+ python-setuptools
+ python-wheel
swig
(list util-linux "lib")))
(home-page "https://www.denx.de/wiki/U-Boot/";)
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 6593eadf6a..16791c74da 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -1041,7 +1041,7 @@ report generation engine.")
(base32
"0gymjcnvjx9snyrzdbmjnk93ibb161q72xam29vnl3yyac4r1330"))))
(build-system pyproject-build-system)
- (native-inputs (list python-nose))
+ (native-inputs (list python-nose python-setuptools python-wheel))
(propagated-inputs
(list python-cached-property python-configargparse
python-jinja2 python-six
@@ -2174,7 +2174,8 @@ timeout has been exceeded.")
;; 'hypothesis' plugin is not in the environment (due to
;; <http://issues.guix.gnu.org/25235>), which would cause the test suite
;; to fail (see: https://github.com/pytest-dev/pytest-forked/issues/54).
- (list python-pytest-bootstrap python-setuptools-scm))
+ (list python-pytest-bootstrap python-setuptools
+ python-setuptools-scm python-wheel))
(home-page "https://github.com/pytest-dev/pytest-forked";)
(synopsis "Pytest plugin to run tests in isolated forked subprocesses")
(description "This package provides a Pytest plugin which enables running
@@ -2499,7 +2500,7 @@ executed.")
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
#$(package-version this-package)))))))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-pytest))
(home-page "https://github.com/pytest-dev/pytest-asyncio";)
(synopsis "Pytest support for asyncio")
@@ -2992,7 +2993,9 @@ a Pytest test execution.")
python-mypy
python-pytest
python-pyyaml
+ python-setuptools
python-regex))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/TypedDjango/pytest-mypy-plugins";)
(synopsis "Pytest plugin for writing tests for mypy plugins")
(description "This package provides a pytest plugin for writing tests for
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 06158f19e7..ede4214f7a 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3204,6 +3204,7 @@ protocol with Cython for performance.")
(build-system pyproject-build-system)
(arguments '(#:tests? #f)) ;test suite requires docker
(propagated-inputs (list python-pymysql))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/aio-libs/aiomysql";)
(synopsis "MySQL driver for Python")
(description "@code{aiomysql} is a driver for accessing a MySQL database
@@ -3645,7 +3646,8 @@ on localhost.")
(build-system pyproject-build-system)
(native-inputs
(list python-cython ; for C extensions
- python-pytest python-mock python-pytest-xdist)) ; for tests
+ python-pytest python-mock python-pytest-xdist ; for tests
+ python-setuptools python-wheel))
(propagated-inputs
(list python-greenlet))
(arguments
@@ -3880,7 +3882,7 @@ text search extension.")
(propagated-inputs (list python-click python-click-default-group
python-dateutil python-sqlite-fts4
python-tabulate))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/simonw/sqlite-utils";)
(synopsis
"CLI tool and Python utility functions for manipulating SQLite databases")
@@ -3953,7 +3955,7 @@ PickleShare.")
"10yfbasi4mq63g0svyl1h49ylwn9znjylq78id16dzxzk9q9ipdx"))))
(build-system pyproject-build-system)
(native-inputs
- (list unzip))
+ (list unzip python-setuptools python-wheel))
(inputs (list sqlite-next)) ;SQLite 3.45.1 required.
(arguments
(list
@@ -4308,7 +4310,7 @@ for Python. The design goals are:
;; The fix was forwarded upstream, see:
;; https://github.com/redis/hiredis-py/pull/160.
(delete-file "tests/__init__.py"))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(inputs (list hiredis))
(home-page "https://github.com/redis/hiredis-py";)
(synopsis "Python extension that wraps protocol parsing code in hiredis")
@@ -4400,6 +4402,8 @@ reasonable substitute.")
(list python-pytest
python-pytest-asyncio
python-pytest-timeout
+ python-setuptools
+ python-wheel
redis))
(propagated-inputs
(list python-async-timeout))
diff --git a/gnu/packages/digest.scm b/gnu/packages/digest.scm
index ae3bf8da75..8e91a9532a 100644
--- a/gnu/packages/digest.scm
+++ b/gnu/packages/digest.scm
@@ -116,7 +116,10 @@ platforms (both big and little endian).")
"1hdxcscry59gh0znlm71ya23mm9rfmvz8lvvlplzxzf63pib28dc"))))
(build-system pyproject-build-system)
;; Needed to embed the correct version string
- (native-inputs (list python-setuptools-scm))
+ (native-inputs
+ (list python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/ifduyue/python-xxhash";)
(synopsis "Python binding for xxHash")
(description "This package provides Python bindings for the xxHash hash
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 6f449f0c39..7534140976 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -2665,9 +2665,14 @@ specification can be downloaded at
@url{http://3mf.io/specification/}.";)
(substitute* "pyvisa/shell.py"
(("from .thirdparty import prettytable")
"import prettytable")))))))
- (native-inputs (list python-pytest))
- (propagated-inputs (list python-dataclasses python-prettytable
- python-typing-extensions))
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-dataclasses
+ python-prettytable
+ python-typing-extensions))
(home-page "https://pyvisa.readthedocs.io/en/latest/";)
(synopsis "Python binding for the VISA library")
(description "PyVISA is a Python package for support of the
diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm
index 614d62f439..c7443fe1a1 100644
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@ -532,7 +532,11 @@ converts any cubic curves to quadratic. The most useful
function is probably
(sha256
(base32 "1rg2997af8blvswlwif0kpz2vxrlh555gzqslz6yv9y7i7v8lphl"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-setuptools-scm))
+ (native-inputs
+ (list python-pytest
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-booleanoperations
python-cffsubr
@@ -679,7 +683,8 @@ process. FontParts is the successor of RoboFab.")
"--ignore=tests/builder/interpolation_test.py")))
(native-inputs
(list python-setuptools-scm
-
+ python-setuptools
+ python-wheel
;; For tests.
python-pytest
python-xmldiff))
@@ -859,6 +864,7 @@ suite of the @code{psautohint} package.")
python-pytest-cov
python-pytest-xdist
python-setuptools-scm
+ python-setuptools
python-wheel))
(home-page "https://github.com/adobe-type-tools/psautohint";)
(synopsis "Adobe's PostScript autohinter")
@@ -1782,8 +1788,13 @@ with @samp{nameIDs}.")
(base32 "0yx4i8q5rfyqhr2fj70a7z1bp1jv7bdlr64ww9z4nv9ycbda4x9j"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-setuptools-scm))
- (propagated-inputs (list python-attrs python-fonttools))
+ (list python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-attrs
+ python-fonttools))
(home-page "https://github.com/fonttools/ufoLib2";)
(synopsis "Unified Font Object (UFO) font processing library")
(description "The ufoLib2 Python library is meant to be a thin
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 5d120b3c98..546bc561b5 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -359,7 +359,9 @@ subdivisions.")
python-numpy
python-pytest
python-scikit-build
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(inputs (list h3))
(home-page "https://uber.github.io/h3-py";)
(synopsis "Python bindings for H3")
@@ -1012,7 +1014,7 @@ pyproj, Rtree, and Shapely.")
(list python-fiona python-packaging python-pandas python-pyproj
python-shapely))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://geopandas.org";)
(synopsis "Geographic pandas extensions")
(description "The goal of GeoPandas is to make working with
@@ -1141,7 +1143,7 @@ during conversion.")
python-pandas
python-requests
python-shapely))
- (native-inputs (list python-hatchling python-pytest))
+ (native-inputs (list python-hatchling python-pytest python-setuptools
python-wheel))
(home-page "https://github.com/gboeing/osmnx";)
(synopsis
"Retrieve, model, analyze, and visualize OpenStreetMap street networks")
@@ -2109,7 +2111,7 @@ from multiple records.")
(string-append "\"" libspatialindex
"/lib/libspatialindex_c.so\"")))))))))
(native-inputs
- (list python-numpy python-pytest python-wheel))
+ (list python-numpy python-pytest python-setuptools python-wheel))
(inputs
(list libspatialindex))
(home-page "https://github.com/Toblerity/rtree";)
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 02033c25b3..46e556ecc0 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -250,8 +250,12 @@ more.")
var (format #f "[~s]~%"
(string-append igraph "/lib")))))))))))
(inputs (list igraph))
- (propagated-inputs (list python-texttable))
- (native-inputs (list python-pytest))
+ (propagated-inputs
+ (list python-texttable))
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://igraph.org/python/";)
(synopsis "Python bindings for the igraph network analysis library"))))
@@ -419,11 +423,12 @@ algorithm for community detection in large networks.")
(("self.use_pkgconfig = False")
"self.use_pkgconfig = True")))))))
(inputs (list igraph))
- (propagated-inputs (list python-igraph))
+ (propagated-inputs (list python-igraph python-setuptools))
(native-inputs
(list pkg-config
python-ddt
- python-setuptools-scm))
+ python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/vtraag/louvain";)
(synopsis "Community detection in large networks")
(description
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index a1626d3c58..b438c86b5c 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -160,7 +160,9 @@ interfaces for other technical domains.")
python-mock
python-pytest
python-pytest-cov
- python-pytest-mock))
+ python-pytest-mock
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/xflr6/graphviz";)
(synopsis "Simple Python interface for Graphviz")
(description
diff --git a/gnu/packages/license.scm b/gnu/packages/license.scm
index b2216615b9..53a0b98f9a 100644
--- a/gnu/packages/license.scm
+++ b/gnu/packages/license.scm
@@ -191,12 +191,17 @@ belonging to various licenses.")
(add-before 'check 'chdir
(lambda _
(chdir "/tmp"))))))
- (native-inputs (list python-poetry-core python-pytest))
- (inputs (list python-binaryornot
- python-boolean.py
- python-debian
- python-jinja2
- python-license-expression))
+ (native-inputs
+ (list python-poetry-core
+ python-pytest
+ python-wheel))
+ (inputs
+ (list python-binaryornot
+ python-boolean.py
+ python-debian
+ python-jinja2
+ python-license-expression
+ python-setuptools)) ; For pkg_resources.
(home-page "https://reuse.software/";)
(synopsis "Provide and verify copyright and licensing information")
(description
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index 988fac3b63..bb59868206 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1047,7 +1047,7 @@ and not test_wmt22_references")
python-portalocker
python-regex
python-tabulate))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mjpost/sacrebleu";)
(synopsis
"Compute shareable, comparable, and reproducible BLEU, chrF, and TER
scores")
@@ -1088,7 +1088,7 @@ unsupervised text tokenizer.")
(build-system pyproject-build-system)
;; This package depends on spacy, which depends on this package.
(arguments (list #:tests? #false))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://spacy.io";)
(synopsis "Legacy registered functions for spaCy backwards compatibility")
(description
@@ -1109,7 +1109,7 @@ compatibility.")
(build-system pyproject-build-system)
;; This package depends on spacy, which depends on this package.
(arguments (list #:tests? #false))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/explosion/spacy-loggers";)
(synopsis "Logging utilities for SpaCy")
(description "This package provides logging utilities for the SpaCy
@@ -1967,6 +1967,8 @@ for scientific computing and data science (e.g. BLAS and
OpenMP).")
python-pandas
python-pytest
python-pytest-cov
+ python-setuptools
+ python-wheel
tensorflow))
(home-page "https://github.com/scikit-learn-contrib/imbalanced-learn";)
(synopsis "Toolbox for imbalanced dataset in machine learning")
@@ -2147,7 +2149,9 @@ standard feature selection algorithms.")
(list python-pytest
python-pytest-lazy-fixture
python-pytorch
- python-torchvision))
+ python-torchvision
+ python-setuptools
+ python-wheel))
(home-page "https://cleanlab.ai";)
(synopsis "Automatically find and fix dataset issues")
(description
@@ -2179,7 +2183,7 @@ data by providing clean labels during training.")
python-scipy
python-tqdm))
(native-inputs
- (list python-pytest))))
+ (list python-pytest python-setuptools python-wheel))))
(define-public python-cma
(package
@@ -2220,7 +2224,7 @@ and a few related numerical optimization tools.")
(base32 "17bk60mhkglz6s7wz6xcyhw1h4mvghc1iid0805dra7jdyafwrfn"))
(file-name (git-file-name name version))))
(build-system pyproject-build-system)
- (native-inputs (list python-hypothesis))
+ (native-inputs (list python-hypothesis python-setuptools python-wheel))
(propagated-inputs (list python-numpy))
(home-page "https://github.com/CyberAgentAILab/cmaes";)
(synopsis "CMA-ES implementation for Python")
@@ -2386,13 +2390,15 @@ interactive learning.")
python-networkx
python-numpy
python-scipy
+ python-setuptools ; For pkg_resources.
python-six
python-tqdm))
(native-inputs
(list python-black
python-nose
python-pymongo
- python-pytest))
+ python-pytest
+ python-wheel))
(home-page "https://hyperopt.github.io/hyperopt/";)
(synopsis "Library for hyperparameter optimization")
(description "Hyperopt is a Python library for serial and parallel
@@ -3962,7 +3968,8 @@ These include a barrier, broadcast, and allreduce.")
;; nor is examples/plot_quantum.py
" and not test_file_is_generated"))))
(propagated-inputs (list python-jsmin python-numpy python-scipy))
- (native-inputs (list python-pytest python-pytest-cov python-sphinx))
+ (native-inputs (list python-pytest python-pytest-cov python-sphinx
+ python-setuptools python-wheel))
(home-page "https://github.com/tensorly/tensorly";)
(synopsis "Tensor learning in Python")
(description
@@ -5123,6 +5130,7 @@ as torchvision, torchtext, and others.")
(lambda _
(delete-file "readchar/_win_read.py"))))))
(propagated-inputs (list python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/magmax/python-readchar";)
(synopsis "Library to easily read single chars and key strokes")
(description "This package provides a Python library to easily read single
@@ -5391,7 +5399,7 @@ implementations and an easy-to-use API to create custom
metrics. It offers:
python-pillow-simd
python-pytorch))
(native-inputs
- (list which python-pytest))
+ (list which python-pytest python-setuptools python-wheel))
(home-page "https://pytorch.org/vision/stable/index.html";)
(synopsis "Datasets, transforms and models specific to computer vision")
(description
@@ -5992,7 +6000,7 @@ fi"
;; Required by codegen.
python-setuptools
python-sympy))
- (native-inputs (list python-pytest python-pytest-xdist))
+ (native-inputs (list python-pytest python-pytest-xdist python-wheel))
(home-page "https://briansimulator.org/";)
(synopsis "Clock-driven simulator for spiking neural networks")
(description
diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm
index 6325c9b96f..d6fab3f32c 100644
--- a/gnu/packages/monitoring.scm
+++ b/gnu/packages/monitoring.scm
@@ -326,7 +326,10 @@ solution (server-side)")))
(string-append #$output "/share/doc/"
#$name "/html")))))))
(native-inputs
- (list python-pytest python-sphinx))
+ (list python-pytest
+ python-setuptools
+ python-sphinx
+ python-wheel))
(inputs
(list ncurses python-requests))
(home-page "https://github.com/unioslo/zabbix-cli";)
diff --git a/gnu/packages/package-management.scm
b/gnu/packages/package-management.scm
index 1763d2d59f..77f5540cf1 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -1088,7 +1088,11 @@ and not test_conda_root_outside_root_environment"))
(add-before 'check 'set-HOME
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
- (list python-clyent python-nbformat python-pyyaml python-requests))
+ (list python-clyent
+ python-nbformat
+ python-pyyaml
+ python-requests
+ python-setuptools))
(native-inputs
(list python-coverage
python-dateutil
@@ -1096,7 +1100,8 @@ and not test_conda_root_outside_root_environment"))
python-mock
python-pillow
python-pytest
- python-pytz))
+ python-pytz
+ python-wheel))
(home-page "https://github.com/Anaconda-Platform/anaconda-client";)
(synopsis "Anaconda Cloud command line client library")
(description
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
index ec990f1382..914779a27b 100644
--- a/gnu/packages/potassco.scm
+++ b/gnu/packages/potassco.scm
@@ -589,7 +589,7 @@ are already predefined, but more can be added as logic
programs.")
(setenv "CLORM_NOCLINGO" "1")
(delete-file "tests/test_mypy_query.py"))))))
(propagated-inputs (list python-clingo))
- (native-inputs (list python-typing-extensions))
+ (native-inputs (list python-typing-extensions python-setuptools
python-wheel))
(home-page "https://potassco.org";)
(synopsis "Object relational mapping to clingo")
(description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM,
@@ -651,6 +651,7 @@ the most probable model as well as finding all models and
their probabilities.")
"1q6hlh4b5hsa4n5agvmfa9rhsxfd2g6kpl4b9kfccwbmf6dh51k6"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-clingo))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://potassco.org/";)
(synopsis "Solve dynamic temporal logic programs")
(description "This package provides a system to solve dynamic temporal
@@ -678,8 +679,10 @@ logic programs based on clingo.")
python-imageio
python-jinja2
python-jsonschema
- python-networkx))
- (native-inputs (list dot2tex graphviz python-pylint python-pytest))
+ python-networkx
+ python-setuptools))
+ (native-inputs (list dot2tex graphviz python-pylint python-pytest
+ python-wheel))
(home-page "https://github.com/potassco/clingraph";)
(synopsis "Visualizer for graphs defined as logic programs")
(description
diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm
index b8679eff25..73e14b3dd8 100644
--- a/gnu/packages/protobuf.scm
+++ b/gnu/packages/protobuf.scm
@@ -395,7 +395,9 @@ any memory-restricted system.")
(list python-grpc-stubs
python-grpcio-tools
python-pytest
- python-typing-extensions))
+ python-typing-extensions
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list protobuf
python-protobuf
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 5b46272bde..5327ad6713 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -218,7 +218,7 @@ Python file, so it can be easily copied into your project.")
(build-system pyproject-build-system)
(arguments (list #:build-backend "setuptools.build_meta"
#:tests? #f)) ;keep dependencies to a minimum
- (native-inputs (list python-wheel))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/pypa/trove-classifiers";)
(synopsis "Canonical source for classifiers on PyPI")
(description "This package is the canonical source for classifiers use on
@@ -649,6 +649,7 @@ specified by PEP 517, @code{flit_core.buildapi}.")
;; builder instead.
#:build-backend "setuptools.build_meta"))
(propagated-inputs (list python-flit-core python-setuptools-scm
python-tomli))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://gitlab.com/WillDaSilva/flit_scm";)
(synopsis "PEP 518 build backend combining flit_core and setuptools_scm")
(description "This package provides a PEP 518 build backend that uses
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 7f8e96c311..76fdd7d1ee 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -791,8 +791,13 @@ files and/or directories.")
;; Requiring git available.
" and not test_generate_diff_basic"))))
(native-inputs
- (list python-numpy python-pytest python-setuptools-scm))
- (home-page "https://github.com/scientific-python/pytest-doctestplus";)
+ (list python-numpy
+ python-pytest
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-setuptools)) ;for pkg_resources
+ (home-page "https://github.com/astropy/pytest-doctestplus";)
(synopsis "Pytest plugin with advanced doctest features")
(description
"This package contains a plugin for the Pytest framework that provides
@@ -841,7 +846,9 @@ for interactively selecting and running Pytest tests.")
(list python-pytest
python-pytest-cov
python-pytest-doctestplus
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/astropy/pytest-filter-subpackage";)
(synopsis "Pytest plugin for filtering based on sub-packages")
(description
@@ -946,7 +953,10 @@ were inadvertently left open at the end of a unit test.")
"not test_default_behavior"
" and not test_strict_with_decorator"))))
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-packaging))
(home-page "https://github.com/astropy/pytest-remotedata";)
@@ -1041,6 +1051,7 @@ framework and makes it easy to undo any monkey patching.
The fixtures are:
#:test-flags #~(list "-m" "mpl_image_compare")))
(native-inputs
(list python-pytest
+ python-setuptools
python-setuptools-scm
python-wheel))
(propagated-inputs
@@ -2055,7 +2066,11 @@ the implementation of that name.")
(("def test_memory_profiler")
"def __off_test_memory_profiler")))))))
(native-inputs
- (list python-pytest python-pytest-fixture-config python-safety))
+ (list python-pytest
+ python-pytest-fixture-config
+ python-safety
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-psutil))
(home-page "https://github.com/pythonprofilers/memory_profiler";)
(synopsis "Memory profiler for Python")
@@ -2512,7 +2527,7 @@ most situations.")
(native-inputs
(list python-pbr python-ddt python-pytest))
(propagated-inputs
- (list python-aiohttp))
+ (list python-aiohttp python-setuptools))
(home-page "https://github.com/pnuckowski/aioresponses";)
(synopsis "Mock out requests made by ClientSession from aiohttp package")
(description
@@ -2760,7 +2775,9 @@ which make writing and running functional and integration
tests easier.")
(native-inputs
(list python-jinja2
python-pytest
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://nox.thea.codes/";)
(synopsis "Flexible test automation")
(description
@@ -2913,8 +2930,12 @@ parametrize. This plugin allows you to use all four.")
(sha256
(base32 "1ncpd74hmsz4sadvjg99fnfscxpgh3mc2siini0dhxzwgwdkk5i7"))))
(build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-pytest-asyncio
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-httpx))
- (native-inputs (list python-pytest python-pytest-asyncio))
(home-page "https://colin-b.github.io/pytest_httpx/";)
(synopsis "Pytest plugin to mock httpx")
(description "This package provides a pytest fixture to mock httpx
@@ -2991,7 +3012,11 @@ running acceptance tests on headless servers.")
;; skip test that uses python-pint
;; pint has many dependencies
"not test_whitelists_with_python")))))))
- (native-inputs (list python-pytest python-pytest-cov))
+ (native-inputs
+ (list python-pytest
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-toml))
(home-page "https://github.com/jendrikseipp/vulture";)
(synopsis "Find dead Python code")
diff --git a/gnu/packages/python-compression.scm
b/gnu/packages/python-compression.scm
index cfabc618d2..3c3c00aff4 100644
--- a/gnu/packages/python-compression.scm
+++ b/gnu/packages/python-compression.scm
@@ -114,7 +114,9 @@ This Python package wraps the Blosc library.")
python-hypothesis
python-pyannotate
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/miurahr/multivolume";)
(synopsis "Treat multiple files as one")
(description "MultiVolumefile is a Python library that provides a
@@ -251,7 +253,9 @@ following algorithms are available:
python-hypothesis
python-pytest
python-pytest-cov
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://codeberg.org/miurahr/pybcj";)
(synopsis "BCJ filter library")
(description "In data compression, BCJ, short for Branch-Call-Jump, refers
@@ -311,6 +315,7 @@ Jump conversion filter by CFFI for Python.")
(setenv "USE_SHARED_BROTLI" "1"))))))
(propagated-inputs (list python-cffi))
(inputs (list brotli))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python-hyper/brotlicffi";)
(synopsis "Python CFFI bindings to the Brotli library")
(description "This package provides Python CFFI bindings to the Brotli
@@ -332,7 +337,9 @@ library.")
(native-inputs
(list python-pyannotate
python-pytest
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://pypi.org/project/inflate64/";)
(synopsis "deflate64 compression/decompression library")
(description "The @code{inflate64} package provides @code{Deflater} and
@@ -361,7 +368,7 @@ compression algorithm.")
(add-after 'unpack 'use-dynamic-linking
(lambda _ (setenv "PYTHON_ISAL_LINK_DYNAMIC" "1"))))))
(inputs (list isa-l))
- (native-inputs (list python-cython))
+ (native-inputs (list python-cython python-setuptools python-wheel))
(home-page "https://github.com/pycompression/python-isal";)
(synopsis "Python bindings for the ISA-L compression library")
(description
@@ -407,7 +414,9 @@ headers compressed with QPACK.")
python-pytest-benchmark
python-pytest-cov
python-pytest-timeout
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/miurahr/pyppmd";)
(synopsis "PPMd compression/decompression library")
(description "Pyppmd provides classes and functions for compressing and
@@ -468,9 +477,8 @@ several possible methods.")
python-pyzstd
python-texttable))
(native-inputs
- (list python-setuptools
- python-setuptools-scm
- python-coverage
+ (list python-coverage
+ python-setuptools
python-coveralls
python-libarchive-c
python-py-cpuinfo
@@ -479,7 +487,9 @@ several possible methods.")
python-pytest-benchmark
python-pytest-cov
python-pytest-remotedata
- python-pytest-timeout))
+ python-pytest-timeout
+ python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/miurahr/py7zr";)
(synopsis "7-zip in Python")
(description "This package provides py7zr, which implements 7-zip
diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm
index 3a7f53abee..aefe8d34ac 100644
--- a/gnu/packages/python-crypto.scm
+++ b/gnu/packages/python-crypto.scm
@@ -302,7 +302,9 @@ do what is needed for client/server Kerberos authentication
based on
(native-inputs
(list python-toml
python-pytest
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-importlib-metadata
python-jaraco-classes
@@ -530,11 +532,13 @@ is used by the Requests library to verify HTTPS
requests.")
(build-system pyproject-build-system)
(arguments (list #:tests? #f)) ; No tests included.
(native-inputs
- (list python-flit-core))
+ (list python-flit-core
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/pyca/cryptography";)
(synopsis "Test vectors for the cryptography package")
(description
- "This package contains test vectors for the cryptography package.")
+ "This package contains test vectors for the cryptography package.")
;; Distributed under either BSD-3 or ASL2.0
(license (list license:bsd-3 license:asl2.0))))
@@ -574,7 +578,10 @@ is used by the Requests library to verify HTTPS requests.")
python-iso8601
python-pretend
python-pytest ;for subtests
- python-pytest-benchmark))
+ python-pytest-benchmark
+ python-pytest-subtests
+ python-setuptools
+ python-wheel))
(inputs (list python-cryptography-rust))
(propagated-inputs (list python-cffi))
(home-page "https://github.com/pyca/cryptography";)
@@ -1072,7 +1079,7 @@ provides drop-in compatibility with PyCrypto.")))
;; certificates.
#:tests? #f))
(inputs (list openssl))
- (native-inputs (list swig))
+ (native-inputs (list swig python-setuptools python-wheel))
(home-page "https://gitlab.com/m2crypto/m2crypto";)
(synopsis "Python crypto and TLS toolkit")
(description "@code{M2Crypto} is a complete Python wrapper for OpenSSL
@@ -1259,7 +1266,11 @@ derivation function.")
(base32
"0d4x84crbz0a17d8gi90z6zlxwm9pslc65rx0cdw2797ra360v3f"))))
(build-system pyproject-build-system)
- (native-inputs (list python-idna python-pytest))
+ (native-inputs
+ (list python-idna
+ python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-attrs python-cryptography python-pyasn1
python-pyasn1-modules python-six))
(home-page "https://service-identity.readthedocs.io/";)
@@ -1490,6 +1501,8 @@ items and collections, editing items, locking and
unlocking collections
python-pytest
python-pytest-cov
python-service-identity
+ python-setuptools
+ python-wheel
python-zipp))
(propagated-inputs
(list python-cryptography
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 6cc9269af3..99f32a64d6 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -369,9 +369,12 @@ routines such as routines for numerical integration and
optimization.")
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs
(list python-dask
- python-numpy))
+ python-numpy
+ python-click))
(native-inputs
(list python-cython
+ python-setuptools
+ python-wheel
;; The following are all needed for the tests
htslib
python-h5py
@@ -590,7 +593,7 @@ swarm algorithm.")
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://scikit-optimize.github.io/";)
(synopsis "Sequential model-based optimization toolbox")
(description "Scikit-Optimize, or @code{skopt}, is a simple and efficient
@@ -1777,7 +1780,7 @@ multiple deep learning frameworks.")
(string-append "not test_datetime_conversion_warning"
" and not test_timedelta_conversion_warning"))))
(native-inputs
- (list python-setuptools-scm python-pytest))
+ (list python-setuptools python-setuptools-scm python-pytest python-wheel))
(propagated-inputs
(list python-numpy python-packaging python-pandas))
(home-page "https://github.com/pydata/xarray";)
@@ -1944,7 +1947,9 @@ parentdir_prefix = pytensor-
(native-inputs (list python-cython
python-pytest
python-pytest-mock
- python-versioneer))
+ python-versioneer
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-cons
python-etuples
python-filelock
@@ -2804,7 +2809,9 @@ aggregated sum and more.")
python-pandas
python-pytest
python-pytest-cov
+ python-setuptools
python-setuptools-scm
+ python-wheel
tzdata-for-tests))
(home-page "https://github.com/has2k1/plotnine";)
(synopsis "Grammar of Graphics for Python")
@@ -3588,7 +3595,12 @@ compagnies.")
"0mrm4rd6x1sm6hkvhk20mkqp9q53sl3lbvq6hqzyymkw1iqq6bhy"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-lxml python-six))
- (native-inputs (list python-pytest python-numpy python-tables))
+ (native-inputs
+ (list python-pytest
+ python-numpy
+ python-setuptools
+ python-tables
+ python-wheel))
(home-page "https://libneuroml.readthedocs.org/en/latest/";)
(synopsis
"Python library for working with NeuroML descriptions of neuronal models")
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index d892e03c9d..88a46c80c5 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -442,7 +442,12 @@ by calling @code{FrozenList.freeze}.")
(build-system pyproject-build-system)
(arguments (list #:test-flags #~(list "tests")))
(propagated-inputs (list python-frozenlist))
- (native-inputs (list python-pytest python-pytest-asyncio
python-pytest-cov))
+ (native-inputs
+ (list python-pytest
+ python-pytest-asyncio
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/aio-libs/aiosignal";)
(synopsis "Callback manager for Python @code{asyncio} projects")
(description "This Python module provides @code{Signal}, an abstraction to
@@ -763,7 +768,9 @@ WSGI. This package includes libraries for implementing
ASGI servers.")
python-httpx
python-pytest
python-pytest-asyncio
- python-starlette))
+ python-starlette
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/simonw/asgi-csrf";)
(synopsis "ASGI middleware for protecting against CSRF attacks")
(description "This Asynchronous Server Gateway Interface (ASGI)
@@ -804,7 +811,9 @@ that is then compared to a @code{csrftoken} hidden form
field or a
(native-inputs (list python-pytest
python-pytest-asyncio
python-pytest-trio
- python-starlette))
+ python-starlette
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-sniffio))
(home-page "https://github.com/florimondmanca/asgi-lifespan";)
(synopsis "Programmatic startup/shutdown of ASGI apps")
@@ -968,7 +977,9 @@ Model} (SAM) templates into AWS CloudFormation templates.")
python-pytest-benchmark
python-requests
python-sqlalchemy
- python-webtest))
+ python-webtest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-aiohttp
python-botocore
@@ -1305,7 +1316,9 @@ over a different origin than that of the web
application.")
python-pytest-randomly
python-pytest-timeout
python-pytest-xdist
- python-six))
+ python-six
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/httplib2/httplib2";)
(synopsis "Comprehensive HTTP client library")
(description
@@ -1701,7 +1714,7 @@ for use in Python programs that implement HTTP/2.")
(base32 "17b97c56y31hi0n0x0cb5a87x4xr9jijf2y06pzj0977k6zgn6cg"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/python-hyper/h11";)
(synopsis "Pure-Python, bring-your-own-I/O implementation of HTTP/1.1")
(description
@@ -2157,7 +2170,9 @@ is Python’s.")
python-pytest-socket
python-requests-mock
python-setuptools-scm
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://omnipathdb.org/";)
(synopsis "Python client for the OmniPath web service")
(description "This package provides a Python client for the OmniPath web
@@ -2187,7 +2202,7 @@ service.")
(propagated-inputs (list python-aiohttp python-requests python-tqdm
python-typing-extensions))
(native-inputs (list python-black python-pytest python-pytest-asyncio
- python-pytest-mock))
+ python-pytest-mock python-setuptools python-wheel))
(home-page "https://github.com/openai/openai-python";)
(synopsis "Python client library for the OpenAI API")
(description "This package provides a Python client library for the
@@ -2392,7 +2407,7 @@ for clients and servers.")
"and not encutils "
"and not website.logging")))))))
(native-inputs
- (list python-pytest python-jaraco-test))
+ (list python-pytest python-jaraco-test python-setuptools python-wheel))
(home-page "https://github.com/jaraco/cssutils";)
(synopsis
"CSS Cascading Style Sheets library for Python")
@@ -2570,7 +2585,7 @@ set out in RFC 7540 Section 5.3 (Stream Priority).")
(base32 "0rahm1j9danv1l6i6as80acwv16ycihxkhrvwjiqh9drxhk5ymmd"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-h11))
(home-page "https://github.com/python-hyper/wsproto/";)
@@ -4316,7 +4331,7 @@ presume or force a developer to use a particular tool or
library.")
"178jzz6jxlxllcjqamzh5q7ahfh90m5cl1il9vmjs3xhz65z35pf"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-brotli python-flask))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(home-page "https://github.com/colour-science/flask-compress";)
(synopsis "Compress responses in a Flask app")
(description
@@ -4339,6 +4354,7 @@ headers required for a compressed response and compresses
the response data.")
(arguments
(list #:tests? #false)) ;there are none
(propagated-inputs (list python-flask))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/maxcountryman/flask-seasurf/";)
(synopsis "CSRF extension for Flask")
(description "SeaSurf is a Flask extension for preventing cross-site
@@ -4770,7 +4786,7 @@ transfers.")
"flask_jwt/__init__.py")
(("access_token.decode\\('utf-8'\\)") "access_token")))))))
(propagated-inputs (list python-flask python-pyjwt))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mattupstate/flask-jwt";)
(synopsis "JWT token authentication for Flask apps")
(description "This package implements JWT token authentication for Flask
@@ -4797,7 +4813,9 @@ apps.")
(native-inputs
(list python-blinker
python-mock
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://www.github.com/flask-restful/flask-restful/";)
(synopsis "Flask module for creating REST APIs")
(description
@@ -5463,9 +5481,9 @@ package from WTForms. The package has been renamed to
(delete-file "tests/test_proxy.py") #t))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-nose))
+ (list python-pytest python-wheel))
(propagated-inputs
- (list python-six))
+ (list python-six python-setuptools))
(home-page "https://pythonpaste.readthedocs.io/";)
(synopsis
"Python web development tools, focusing on WSGI")
@@ -5738,6 +5756,7 @@ with oauthlib.")
python-stem
python-validators
python-waitress))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/benbusby/whoogle-search";)
(synopsis "Self-hosted, ad-free, privacy-respecting metasearch engine")
(description
@@ -5835,7 +5854,7 @@ ecosystem.")
;; Pretend to be a CI system to skip flaky tests.
(setenv "CI" "true"))))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-idna))
(home-page "https://github.com/python-hyper/hyperlink";)
@@ -6617,7 +6636,9 @@ and serve updated contents upon changes to the
directory.")
python-pytest-httpbin
python-pytest-trio
python-uvicorn
- python-trustme))
+ python-setuptools
+ python-trustme
+ python-wheel))
(propagated-inputs
(list python-anyio
python-certifi
@@ -6651,7 +6672,7 @@ Some things HTTP Core does do:
(package/inherit python-httpcore
(name "python-httpcore-bootstrap")
(arguments (list #:tests? #f))
- (native-inputs '()))))
+ (native-inputs (list python-setuptools python-wheel)))))
(define-public python-httpx
(package
@@ -6696,7 +6717,9 @@ Some things HTTP Core does do:
python-trio
python-trio-typing
python-trustme
- python-uvicorn))
+ python-uvicorn
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-charset-normalizer
python-brotli
@@ -6928,7 +6951,7 @@ major web browsers.")
"/include/rapidjson" "'"))
(("if not os.path.isdir.*") "if False:")))))))
(native-inputs
- (list rapidjson python-pytest python-pytz))
+ (list rapidjson python-pytest python-pytz python-setuptools python-wheel))
(home-page "https://github.com/python-rapidjson/python-rapidjson";)
(synopsis "Python wrapper around rapidjson")
(description "This package provides a python wrapper around rapidjson.")
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 22e89a3b80..f915d21fd1 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -511,7 +511,8 @@ similar XML files, in the same way the @command{diff}
utility does it.")
(base32 "04hnrdcf03g1s0x3sr72sh9gnszz6kyfsl9dg8a4n0zvvhn6z5yz"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-pytest-cov python-pytest-asyncio))
+ (list python-pytest python-pytest-cov python-pytest-asyncio
+ python-setuptools python-wheel))
(propagated-inputs (list python-typing-extensions))
(home-page "https://github.com/aio-libs/janus/";)
(synopsis
@@ -974,6 +975,7 @@ and variables you'll need already imported and created.
(substitute* "setup.py"
((".\\*\"") "\"")))))))
(propagated-inputs (list python-numpy python-scipy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/joachimwolff/fit_nbinom";)
(synopsis "Negative binomial maximum likelihood estimator")
(description "This package provides an implementation in Python using
@@ -992,7 +994,8 @@ scipy and numpy of negative binomial maximum likelihood
estimation.")
"0523jrzjj29kxpdllmfhrfj9kysi9mphp2m7ippjkn5b07i1g2pd"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-six))
- (native-inputs (list python-pytest python-pytest-runner))
+ (native-inputs (list python-pytest python-pytest-runner
+ python-setuptools python-wheel))
(home-page "https://github.com/Chilipp/docrep";)
(synopsis "Python package for docstring repetition")
(description "Docrep is the documentation repetition module. This module
@@ -1070,6 +1073,7 @@ features of the Python's built-in dict.")
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
(propagated-inputs (list python-matplotlib python-numpy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/Phlya/adjustText";)
(synopsis "Adjust text position in matplotlib plots to minimize overlaps")
(description
@@ -1231,6 +1235,7 @@ HoloViews, and Datashader.")
"196ins0m7f90xz5dw764dlx060ziqbcydqzzq40b4ir5858baf3r"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;the tests are not run automatically
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://gitlab.com/dslackw/colored";)
(synopsis "Simple library for color and formatting to terminal")
(description "This is a very simple Python library for color and
@@ -1253,7 +1258,8 @@ names for 256 color terminal setups.")
(base32 "0kyy9qhvrb5m9h8xmri7c88i0k1g5qc7017anw39gx44an7mn33y"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-coverage python-flake8 python-pytest))
+ (list python-coverage python-flake8 python-pytest python-setuptools
+ python-wheel))
(propagated-inputs
(list python-colorama))
(home-page "http://github.com/timofurrer/colorful";)
@@ -1694,7 +1700,8 @@ Specification v2.0 (PEP 249).")
(base32
"0gxkw607nrd67ck4w8jri9vfrm5g60qvp8b134m8zkiphbxjnx0l"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-jinja2 python-pygments))
+ (native-inputs (list python-pytest python-jinja2 python-pygments
+ python-setuptools python-wheel))
(arguments
(list
;; Some tests fail, presumably because of slight version mismatches of
@@ -1801,6 +1808,7 @@ different units.")
"1gpy1z2i4vq1mcrhysxahz4339pbl9rzk58rf5m5gf5ym9xji6ii"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/piccolomo/plotext";)
(synopsis "Plots in the terminal")
(description "Plotext lets you plot directly to the terminal.")
@@ -1995,6 +2003,8 @@ generator MkDocs.")
python-matplotlib
python-pandas
python-poetry-core
+ python-setuptools
+ python-wheel
python-pytest))
(home-page "https://github.com/crflynn/skranger";)
(synopsis "Python bindings for C++ ranger random forests")
@@ -2162,7 +2172,7 @@ threads.")
(build-system pyproject-build-system)
(native-inputs
(list python-setuptools-scm python-tornado-6 python-typeguard
- python-pytest))
+ python-pytest python-setuptools python-wheel))
(home-page "https://github.com/jd/tenacity";)
(synopsis "Retrying library for python")
(description "Tenacity is a general-purpose python library to simplify the
@@ -2647,7 +2657,7 @@ utilities such as ping(1).")
python-click-plugins
python-cligj
python-numpy
- python-setuptools
+ python-setuptools ; For pkg_resources.
python-snuggs))
(native-inputs (list gdal
python-boto3
@@ -2656,7 +2666,8 @@ utilities such as ping(1).")
python-packaging
python-pytest
python-pytest-cov
- python-shapely))
+ python-shapely
+ python-wheel))
(home-page "https://github.com/rasterio/rasterio";)
(synopsis "Fast and direct raster I/O for use with Numpy and SciPy")
(description "This package implements fast and direct raster I/O for use
@@ -2683,7 +2694,7 @@ with Numpy and SciPy.")
;; Cython extensions have to be built before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
- (list python-cython python-matplotlib python-pytest))
+ (list python-cython python-matplotlib python-pytest python-setuptools
python-wheel))
(inputs
(list geos))
(propagated-inputs
@@ -2969,7 +2980,9 @@ NetCDF files can also be read and modified. Python-HDF4
is a fork of
(native-inputs
(list python-netcdf4
python-pytest
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-h5py python-packaging))
(home-page "https://h5netcdf.org";)
@@ -3311,7 +3324,7 @@ and lookups.")
(base32 "0lvshl2fhwa568d3y3vmx45hdp8gk5w9yl3b2q5d66r5vqn1sfwl"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm python-pytest))
+ (list python-setuptools-scm python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-boolean.py))
(home-page "https://github.com/nexB/license-expression";)
@@ -3433,7 +3446,8 @@ inter-process communication.")
(base32
"058av1r760ws7z6qffsjpqa39fmdxw0s1wnyr7p50y3zclg6cyqk"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-setuptools-scm))
+ (native-inputs (list python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/tox-dev/py-filelock";)
(synopsis "Platform independent file lock")
(description "@code{filelock} contains a single module implementing
@@ -3717,7 +3731,8 @@ your Python package version as a calendar version.")
;; These tests fail with "OSError: [Errno 19] No such device".
"-k" "not BasicTestUdpMulticastBusIPv")))
(propagated-inputs
- (list python-msgpack python-typing-extensions python-wrapt))
+ (list python-msgpack python-typing-extensions python-wrapt
+ python-setuptools))
(native-inputs
(list ;; python-canalystii ; Not packed yet
python-codecov
@@ -3730,7 +3745,8 @@ your Python package version as a calendar version.")
python-pytest
python-pytest-cov
python-pytest-runner
- python-pytest-timeout))
+ python-pytest-timeout
+ python-wheel))
(home-page "https://github.com/hardbyte/python-can";)
(synopsis "Controller Area Network (CAN) interface module for Python")
(description "This package defines the @code{can} module, which provides
@@ -3865,6 +3881,7 @@ a library.")
(base32 "1920wbh2b7a8qn7zx2iiqbcdaax335l81a73x9pp8h11yzs2jdmh"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;There are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/gvalkov/optparse-pretty";)
(synopsis "Compact help formatter for optparse")
(description
@@ -4075,6 +4092,7 @@ for additional processing.")
;; XXX: Fails with: "In procedure utime: No such file
;; or directory".
(delete 'ensure-no-mtimes-pre-1980))))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/fastai/fastprogress";)
(synopsis "Progress bar for Jupyter Notebook and console")
(description
@@ -4308,6 +4326,8 @@ of @code{xmlfile}.")
python-pytest
python-pytest-rerunfailures
python-pytest-xdist
+ python-setuptools
+ python-wheel
unzip
(origin
(method url-fetch)
@@ -4670,7 +4690,9 @@ Python.")
python-pytest-subtests
python-responses
python-tox
- python-types-requests))
+ python-types-requests
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/omni-us/jsonargparse/";)
(synopsis "Implement minimal boilerplate CLIs derived from type hints")
(description
@@ -4899,7 +4921,7 @@ commands.")
(base32
"1a4h0jpsr3wjciqg9a5kslxv65d3qqgmqgkpai4cl77wlpcxfk89"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://jiffyclub.github.io/palettable/";)
(synopsis "Color palettes for Python")
(description "Palettable (formerly brewer2mpl) is a library of color
@@ -4980,7 +5002,8 @@ syntax.")
(string-append "not test_sending_empty_netstring"
" and not test_sending_one_netstring"
" and not test_sending_two_netstrings"))))
- (native-inputs (list python-pytest python-twisted))
+ (native-inputs (list python-pytest python-twisted python-setuptools
+ python-wheel))
(home-page "https://launchpad.net/parsley";)
(synopsis "Parsing and pattern matching Python library")
(description
@@ -5131,7 +5154,9 @@ PDF, PNG, EPS and SVG).")
python-pytest-cov
python-pytest-mypy
python-pytest-timeout
- python-redis))
+ python-redis
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/WoLpH/portalocker";)
(synopsis "Python library for file locking")
(description "Portalocker is a library to provide an easy API to file
@@ -5239,14 +5264,16 @@ and is not compatible with JSON.")
python-pytest-astropy
python-pytest-cov
python-setuptools-scm
- python-tomli))
+ python-tomli
+ python-setuptools
+ python-wheel))
(home-page "https://extension-helpers.readthedocs.io";)
(synopsis "Astropy ecosystem utilities for building and installing
packages")
(description
- "The extension-helpers package includes convenience helpers to assist with
-building Python packages with compiled C/Cython extensions. It is developed by
-the Astropy project but is intended to be general and usable by any Python
-package.")
+ "The extension-helpers package includes convenience helpers to assist
+with building Python packages with compiled C/Cython extensions. It is
+developed by the Astropy project but is intended to be general and usable by
+any Python package.")
(license license:bsd-3)))
(define-public python-extras
@@ -5734,12 +5761,14 @@ clickgen is using @code{anicursorgen} and
@code{xcursorgen} under the hood.")
python-orjson
python-pandas
python-pytz
+ python-setuptools ; For pkg_resources.
python-sqlalchemy
python-urllib3
python-zstandard))
(native-inputs
(list python-cython
- python-pytest))
+ python-pytest
+ python-wheel))
(home-page "https://github.com/ClickHouse/clickhouse-connect";)
(synopsis
"ClickHouse database core driver for Python, Pandas, and Superset")
@@ -5784,7 +5813,7 @@ well-tested and interoperable CLIs for handling GeoJSON.")
"05c6cjpnf9s72gyn5dckxbmd8rf2kgdzfsl7pqzrnc1lcdl13zmv"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-click))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/janLuke/cloup";)
(synopsis "Extension library for python-click")
(description
@@ -5912,7 +5941,8 @@ and convert DDL to BigQuery JSON schema.")
(when tests?
(setenv "JSON_SCHEMA_TEST_SUITE" "json")
(invoke "trial" "jsonschema")))))))
- (native-inputs (list python-setuptools-scm python-twisted))
+ (native-inputs (list python-setuptools-scm python-twisted
+ python-setuptools python-wheel))
(propagated-inputs
(list python-attrs
python-importlib-metadata
@@ -6115,7 +6145,9 @@ memory usage and transliteration quality.")
python-cryptography
python-pytest
python-sphinx
- python-sphinx-rtd-theme))
+ python-sphinx-rtd-theme
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/progrium/pyjwt";)
(synopsis "JSON Web Token implementation in Python")
(description
@@ -6362,7 +6394,7 @@ work on your part.")
(base32
"17f55gi55rg47nm88fn3f8851ph03dgykdp011lxr3j6hk18lyfv"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tsutsu3/uc.micro-py";)
(synopsis "Unicode data files for linkify-it-py projects")
(description "This package contains a micro subset of Unicode data files
@@ -6384,7 +6416,7 @@ for linkify-it-py projects.")
"0fg0a1lc8xbb62y9krxcp708ll58dxcwm8i7rrwpkd5sh2229f6x"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-uc-micro-py))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tsutsu3/linkify-it-py";)
(synopsis "Links recognition library with full Unicode support")
(description "This is Python port of
@@ -6409,7 +6441,7 @@ recognition library with full Unicode support. It has
features like:
"19a8dga8rnmjn5gy1cy1wdi28swbkdkypwbqikbxil6ynqcg3c20"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest python-setuptools python-setuptools-scm python-wheel))
(home-page "https://github.com/smarie/python-makefun";)
(synopsis "Library to dynamically create python functions")
(description "@code{makefun} helps create functions dynamically with a
@@ -7087,8 +7119,8 @@ via commands such as @command{rst2man}, as well as
supporting Python code.")
(list behave
python-pyparsing
python-pytest
- python-pytest-cov
- python-pytest-xdist))
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-lxml python-typing-extensions))
(home-page "https://github.com/python-openxml/python-docx/";)
@@ -7231,7 +7263,7 @@ with Python.")
;; basic tests.
'(list "--ignore-glob=tests/*/*")))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://pygments.org/";)
(synopsis "Syntax highlighting")
(description
@@ -7286,6 +7318,7 @@ working with Valve's VDF text format.")
(base32
"1qm4xdmzd4q5pc9h5gjdpr5m7lg06k8dvqnjn7d07d3fhani8d90"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/mina86/pygtrie";)
(synopsis "Pure Python trie data structure implementation")
(description
@@ -8984,7 +9017,7 @@ readable format.")
(base32 "1v34xdvh6i5cn5srwicvp0i2kvv8fzsv0v9p72ng081nsczmhgvr"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-cffi libgit2))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/libgit2/pygit2";)
(synopsis "Python bindings for libgit2")
(description "Pygit2 is a set of Python bindings to the libgit2 shared
library.")
@@ -9197,7 +9230,9 @@ semantic version parser for Node.js.")
(base32
"1r1lcq59v6l75wkbp7mypanr69a6fv6m58v6dw3v6b4vwz5nqg0z"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-appdirs python-nose python-pyyaml))
+ (propagated-inputs (list python-appdirs python-nose python-pyyaml
+ python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/simonvh/norns";)
(synopsis "Simple YAML-based config module")
(description "This package provides a simple YAML-based config module.")
@@ -10192,7 +10227,7 @@ and therefore easier to read and write.")
;; NOTE: Any value works, the variable just has to be present.
(setenv "SKIP_ONLINE" "1"))))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(inputs
(list bash-minimal))
(home-page "https://github.com/pypa/distlib";)
@@ -10920,10 +10955,10 @@ from FFMPEG, reliably terminating the process when
done.")
(delete-file "tests/test_freeimage.py"))))))
(inputs (list freeimage))
(propagated-inputs
- (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile))
+ (list python-imageio-ffmpeg python-numpy python-pillow python-tifffile
python-setuptools))
(native-inputs
(list python-black python-flake8 python-fsspec python-pytest
- python-pytest-cov))
+ python-pytest-cov python-wheel))
(home-page "https://imageio.github.io/";)
(synopsis "Library for reading and writing a wide range of image data")
(description
@@ -12139,7 +12174,9 @@ releases.")
python-pytest-cov
python-pytest-enabler
python-pytest-flake8
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/jaraco.test";)
(synopsis "Testing support by jaraco")
(description "This package provides testing support by jaraco.")
@@ -12587,6 +12624,7 @@ container data structures in Python).")
python-pyzmq
python-tornado-6
python-traitlets))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://jupyter.org/";)
(synopsis "Jupyter protocol implementation and client libraries")
(description
@@ -12624,7 +12662,9 @@ installing @code{kernelspec}s for use with Jupyter
frontends.")
python-pytest-timeout
python-async-generator
python-ipython
- python-ipykernel-bootstrap))
+ python-ipykernel-bootstrap
+ python-setuptools
+ python-wheel))
(properties (alist-delete 'hidden? (package-properties base))))))
(define-public python-ipykernel
@@ -12700,7 +12740,9 @@ installing @code{kernelspec}s for use with Jupyter
frontends.")
;; and causes deprecation warnings. Using the bootstrap variant
;; avoids that.
python-pytest-bootstrap
- python-pytest-timeout))
+ python-pytest-timeout
+ python-setuptools
+ python-wheel))
(home-page "https://ipython.org";)
(synopsis "IPython Kernel for Jupyter")
(description "This package provides the IPython kernel for Jupyter.")
@@ -12719,7 +12761,7 @@ installing @code{kernelspec}s for use with Jupyter
frontends.")
;; left out here to break the cycle.
#:phases #~(modify-phases %standard-phases
(delete 'sanity-check))))
- (native-inputs '())
+ (native-inputs (list python-setuptools python-wheel))
(propagated-inputs
(modify-inputs (package-propagated-inputs parent)
(replace "python-jupyter-client" python-jupyter-client-bootstrap)
@@ -12789,7 +12831,9 @@ callback signature using a prototype function.")
python-unidecode))
(native-inputs
(list python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/titipata/pubmed_parser";)
(synopsis "Parser for Pubmed Open-Access Subset and MEDLINE XML
repository")
(description
@@ -14162,6 +14206,7 @@ falling into the Python interpreter.")
"{ name = \"Maarten van der Sande\", email =
\"maartenvandersande@hotmail.com\"}")
(("license = \"MIT\"") "license = { file = \"LICENSE\"}")))))))
(propagated-inputs (list python-numba python-numpy python-pandas))
+ (native-inputs (list python-setuptools python-wheel python-toml))
(home-page "https://github.com/Maarten-vd-Sande/qnorm";)
(synopsis "Quantile normalization")
(description "This tool implements quantile normalization. It properly
@@ -14222,7 +14267,9 @@ low-level X clients. It is written entirely in
Python.")
(build-system pyproject-build-system)
(native-inputs
(list python-pytest
- python-six)) ; required for conversion, not at run-time
+ python-setuptools
+ python-six ; required for conversion, not at run-time
+ python-wheel))
(home-page
"https://docs.python.org/3/library/functools.html#functools.singledispatch";)
(synopsis "Backport of singledispatch feature from Python 3.4")
@@ -14658,7 +14705,8 @@ plugin for flake8 to check PEP-8 naming conventions.")
"0yvs59ymz5gdix34a95wxlxvk9bnvjgrzsnmnc3ws7whpfv3yasm"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-packaging))
- (native-inputs (list python-pypa-build python-pytest python-tomli))
+ (native-inputs (list python-pypa-build python-pytest python-setuptools
+ python-tomli python-wheel))
(home-page "https://github.com/FFY00/python-pyproject-metadata";)
(synopsis "Dataclass for PEP 621 metadata")
(description "This project does not implement the parsing of
@@ -15473,7 +15521,8 @@ the @code{sendfile(2)} system call.")
;; Using Pytest instead of the Makefile causes the command line tests to
;; fail on unknown Pytest arguments.
(arguments (list #:test-flags #~(list "-k" "not TestCommandLineParser")))
- (native-inputs (list python-psutil python-pytest))
+ (native-inputs (list python-psutil python-pytest python-setuptools
+ python-wheel))
(propagated-inputs (list python-pyopenssl python-pysendfile))
(home-page "https://github.com/giampaolo/pyftpdlib/";)
(synopsis "Asynchronous and scalable Python FTP server library")
@@ -16264,7 +16313,8 @@ asyncio.")
"0yv1wayrw9g6k0c2f721kha7wsv0s1fdlxpf5x7f34iqzq9z272h"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-pyparsing))
- (native-inputs (list python-hypothesis python-pytest))
+ (native-inputs (list python-hypothesis python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/mapbox/snuggs";)
(synopsis "Snuggs are S-expressions for Numpy")
(description "Snuggs are S-expressions for Numpy.")
@@ -16751,7 +16801,7 @@ domains support.")
(build-system pyproject-build-system)
(arguments
(list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools python-setuptools-scm
python-wheel))
(home-page "https://github.com/jaraco/path";)
(synopsis "Object-oriented file system path manipulation library")
(description "@code{path} (formerly @code{path.py}) implements path
@@ -17382,7 +17432,9 @@ significantly better performance.")
python-pylint
python-pytest
python-pytest-benchmark
- python-pytest-cache))
+ python-pytest-cache
+ python-setuptools
+ python-wheel))
(home-page
"https://github.com/horejsek/python-fastjsonschema";)
(synopsis
@@ -17465,7 +17517,7 @@ systems, as a command line tool, and as a Python
library.")
(delete-file-recursively "bleach/_vendor/html5lib")))))
(build-system pyproject-build-system)
(propagated-inputs (list python-html5lib python-tinycss2))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mozilla/bleach";)
(synopsis "Whitelist-based HTML-sanitizing tool")
(description "Bleach is an easy whitelist-based HTML-sanitizing tool.")
@@ -18001,7 +18053,7 @@ simulation, statistical modeling, machine learning and
much more.")
(base32
"1r9ixxnish9j3dq4h0z0cwlkr4f5lgi6d8mhbzw59hbbjlmp2qhd"))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(build-system pyproject-build-system)
(arguments
(list #:test-flags
@@ -18215,7 +18267,7 @@ This allows one to make simple text-mode user
interfaces on Unix-like systems")
(build-system pyproject-build-system)
(propagated-inputs (list python-pydantic python-srsly
python-typing-extensions))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/explosion/confection";)
(synopsis "Config system for Python")
(description "Confection is a lightweight library that offers a
@@ -18282,7 +18334,8 @@ config files.")
(propagated-inputs (list java-antlr4-runtime-python
python-pydevd
python-pyyaml))
- (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock))
+ (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock
+ python-setuptools python-wheel))
(home-page "https://github.com/omry/omegaconf";)
(synopsis "Flexible configuration system")
(description "OmegaConf is a hierarchical configuration system and
@@ -18301,10 +18354,10 @@ consistent API regardless of how the configuration
was created.")
(base32
"1l866g1dcf2ljf8fl7ggpxk1rggry0lya4d5b264gradi1qp81p7"))))
(build-system pyproject-build-system)
- (native-inputs
- (list python-mock python-pytest))
(propagated-inputs
(list python-pyyaml))
+ (native-inputs
+ (list python-mock python-pytest python-setuptools python-wheel))
(synopsis "Replacement for argparse")
(description "A drop-in replacement for argparse that allows options to
also
be set via config files and/or environment variables.")
@@ -19433,6 +19486,7 @@ in pure Python.")
(base32
"14hwk9j5zjc8rvirw95mrb07zdnpjaxjx2mj3rnq8pnlyaa809r4"))))
(build-system pyproject-build-system)
+ (arguments (list #:tests? #f)) ; No tests in PyPi tarball.
(native-inputs
(list python-poetry-core))
(home-page "https://github.com/srstevenson/xdg-base-dirs";)
@@ -19949,7 +20003,8 @@ synchronously (wait until ready).")
python-scikit-learn
python-scipy
python-toolz))
- (native-inputs (list python-cython python-pytest python-setuptools-scm))
+ (native-inputs (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://pypi.org/project/cesium/";)
(synopsis "Library for time-series feature extraction and processing")
(description
@@ -20026,7 +20081,8 @@ ISO 8859, etc.).")
(lambda _
(setenv "QT_QPA_PLATFORM" "offscreen"))))))
(native-inputs
- (list python-pytest python-pytest-cov python-pytest-xdist))
+ (list python-pytest python-pytest-cov python-pytest-xdist
+ python-setuptools python-wheel))
(inputs
(list qtbase-5))
(propagated-inputs
@@ -20214,7 +20270,9 @@ checking library.")
python-pytest
python-pytest-cov
python-pytest-dependency
- python-tomli))
+ python-tomli
+ python-setuptools
+ python-wheel))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -21329,7 +21387,9 @@ def get_requires_for_build_sdist(config_settings=None):
python-pytest-flake8
python-pytest-mypy
;; For the version number
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/inflect";)
(synopsis "Correctly generate plurals, singular nouns, ordinals,
indefinite articles")
(description
@@ -23601,7 +23661,8 @@ JPEG2000 and GIF files in pure Python.")
(propagated-inputs
(list pigz python-isal python-typing-extensions))
(native-inputs
- (list python-pytest python-pytest-timeout python-setuptools-scm))
+ (list python-pytest python-pytest-timeout python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/marcelm/xopen/";)
(synopsis "Open compressed files transparently")
(description "This module provides an @code{xopen} function that works
@@ -23685,6 +23746,7 @@ efficient as possible on all supported Python
versions.")
"1gqfh00ics2k1sm5g46l3bi8cl5fc5d1cwzh1ylvcxvdvypklqc7"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/noahmorrison/chevron";)
(synopsis "Mustache templating language renderer")
(description "This package provides a Python implementation of the
@@ -23747,7 +23809,9 @@ Mustache templating language renderer.")
python-pyarrow
python-pytest
python-pytest-runner
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://www.duckdb.org";)
(synopsis "DuckDB embedded database")
(description "DuckDB is an in-process SQL OLAP database management
@@ -24668,6 +24732,7 @@ point is the point of maximum curvature.")
python-jinja2
python-pluggy
python-pygments
+ python-setuptools ; For pkg_resources.
python-tomli))
(native-inputs
(list python-flake8
@@ -24882,7 +24947,8 @@ while only declaring the test-specific fields.")
;; Disable tests that require internet.
(list #:test-flags '(list "-k" "not net")))
(native-inputs
- (list python-pytest python-testfixtures python-click python-requests))
+ (list python-pytest python-testfixtures python-click python-requests
+ python-setuptools python-wheel))
(home-page "https://github.com/pndurette/gTTS";)
(synopsis "Google Translate text-to-speech interface")
(description
@@ -25413,7 +25479,9 @@ manipulation, or @code{stdout}.")
python-mypy
python-pytest
python-pytz
- python-simplejson))
+ python-simplejson
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/marshmallow-code/marshmallow";)
(synopsis "Convert complex datatypes to and from native Python datatypes")
(description "@code{marshmallow} provides a library for converting complex
@@ -25475,7 +25543,9 @@ datatypes to and from native Python datatypes.")
python-marshmallow
python-mypy
python-pytest
- python-pyyaml))
+ python-pyyaml
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/marshmallow-code/apispec";)
(synopsis "Swagger/OpenAPI specification generator")
(description "@code{python-apispec} is a pluggable API specification
@@ -25494,7 +25564,7 @@ Swagger.")
(base32
"1wyw30402xq2a8icrsjmy9v43jyvawcjd85ccb2zicqlg4k5pcqd"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-apispec))
+ (propagated-inputs (list python-apispec python-setuptools))
(native-inputs
(list python-bottle
python-flake8
@@ -25504,7 +25574,8 @@ Swagger.")
python-pytest
python-pyyaml
python-tornado
- python-tox))
+ python-tox
+ python-wheel))
(home-page "https://github.com/marshmallow-code/apispec-webframeworks";)
(synopsis "Web framework plugins for apispec")
(description "This package provides plugins for using @code{apispec} with
@@ -26224,7 +26295,9 @@ particularly convenient for use in tests.")
python-pytest-mypy
python-setuptools-scm
python-types-freezegun
- python-types-pytz))
+ python-types-pytz
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-jaraco-functools python-pytz))
(home-page "https://github.com/jaraco/tempora";)
(synopsis "Python date and time objects and routines")
@@ -26348,7 +26421,9 @@ queue.")
(list python-pytest
python-pytest-asyncio
python-pytest-repeat
- python-pytest-timeout))
+ python-pytest-timeout
+ python-setuptools
+ python-wheel))
(home-page "https://zict.readthedocs.io/en/latest/";)
(synopsis "Composable mutable mapping tools")
(description "This package provides abstract @code{MutableMapping} classes
@@ -26538,7 +26613,7 @@ files, and Makefiles.")
(base32 "1q7ajgqjfivxqsqgnhp4lc4p6jxyh4zprcsdbpd6dw54inaf0av5"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/Suor/whatever";)
(synopsis "Make anonymous functions by partial application of operators")
(description "@code{whatever} provides an easy way to make anonymous
@@ -26560,7 +26635,7 @@ functions by partial application of operators.")
(file-name (git-file-name name version))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-whatever))
+ (list python-pytest python-whatever python-setuptools python-wheel))
(home-page "https://github.com/Suor/funcy";)
(synopsis "Functional tools")
(description "@code{funcy} is a library that provides functional tools.
@@ -27039,7 +27114,7 @@ working with iterables.")
"040i6bjqvl33j30v865shsk30s3h7f16pqwiaj5kig857dfmqm4r"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-bitarray python-xxhash))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/joseph-fox/python-bloomfilter";)
(synopsis "Bloom filter")
(description "This package provides a scalable Bloom filter implemented in
@@ -28204,7 +28279,8 @@ tool).")
python-msgpack
python-typing-extensions))
(native-inputs
- (list python-cython python-pytest python-setuptools-scm))
+ (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/zarr-developers/numcodecs";)
(synopsis "Buffer compression and transformation codecs")
(description
@@ -28330,6 +28406,7 @@ N-dimensional arrays for Python.")
python-pandas
python-scipy
python-scikit-learn
+ python-setuptools ; For pkg_resources.
python-zarr))
(native-inputs
(list python-awkward
@@ -28376,7 +28453,7 @@ object-oriented library such as @code{scikit-learn}.")
(with-directory-excursion "/tmp"
(invoke "nosetests" "-v"))))))))
(native-inputs
- (list python-nose))
+ (list python-nose python-setuptools python-wheel))
(home-page "https://pypi.org/project/dill/";)
(synopsis "Serialize all of Python")
(description "Dill extends Python's @code{pickle} module for serializing
@@ -28428,6 +28505,7 @@ preload_resources\
(invoke "python" "-m" "multiprocess.tests")))))))
(propagated-inputs
(list python-dill))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://pypi.org/project/multiprocess/";)
(synopsis "Multiprocessing and multithreading in Python")
(description
@@ -28740,7 +28818,8 @@ append on old values. Partd excels at shuffling
operations.")
(propagated-inputs
(list python-aiohttp python-libarchive-c python-requests python-tqdm))
(native-inputs
- (list python-pytest python-pytest-mock python-numpy))
+ (list python-pytest python-pytest-mock python-numpy python-setuptools
+ python-wheel))
(home-page "https://github.com/intake/filesystem_spec";)
(synopsis "File-system specification")
(description "The purpose of this package is to produce a template or
@@ -29051,6 +29130,7 @@ RFC 8265 and RFC 8266.")
(base32
"0ga3b0m8lfsv1m3260p83lhis52yvz3d42q8gip4gfj823849hnj"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/abseil/abseil-py";)
(synopsis "Abseil Python common libraries")
(description
@@ -29355,7 +29435,8 @@ programs that do multiple things at the same time with
parallelized I/O.")
(sha256
(base32 "15wa66cs165wawh4pi808ac43n67b8jqddi5ppdcbkj5gfi68hpi"))))
(build-system pyproject-build-system)
- (native-inputs (list python-attrs python-pytest))
+ (native-inputs (list python-attrs python-pytest python-setuptools
+ python-wheel))
(propagated-inputs
(list python-mypy python-mypy-extensions python-trio
python-typing-extensions))
@@ -30609,7 +30690,7 @@ scripts to load entry points more quickly.")
(when tests?
(invoke "python" "-m" "unittest" "discover" "-v")))))))
;; ModuleNotFoundError: No module named 'poetry'
- (native-inputs (list python-poetry-core))
+ (native-inputs (list python-poetry-core python-six))
(home-page "https://github.com/vlasovskikh/funcparserlib";)
(synopsis
"Recursive descent parsing library based on functional combinators")
@@ -30885,7 +30966,9 @@ but portable.")
python-pytest-cov
python-pytest-mock
python-pytest-sugar
- python-pytest-toolbox))
+ python-pytest-toolbox
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/samuelcolvin/watchgod";)
(synopsis "Simple, modern file watching and code reload in Python")
(description
@@ -32223,7 +32306,7 @@ placement and scaling of SVG figures and adding
markers, such as labels.")
;; Avoid python-pytest-coverage
#:test-flags '(list "-c /dev/null")))
(propagated-inputs (list python-six python-wcwidth))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/jquast/blessed";)
(synopsis "Wrapper around terminal capabilities")
(description
@@ -32498,7 +32581,8 @@ It adds a simple and readable way to print stuff during
development.")
(list python-dateutil python-pytz python-regex python-ruamel.yaml
python-tzlocal))
(native-inputs
- (list python-flake8 python-pytest python-parameterized tzdata-for-tests))
+ (list python-flake8 python-pytest python-parameterized tzdata-for-tests
+ python-setuptools python-wheel))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -33398,7 +33482,9 @@ older versions of Python and so are packaged here.")
python-sphinx
python-sphinx-autobuild
python-sphinx-rtd-theme
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/Delgan/loguru";)
(synopsis "Python logging made (stupidly) simple")
(description "Python logging made (stupidly) simple")
@@ -36053,6 +36139,7 @@ Python, with static types.")
"0cas3cjkhrvsz2rmqnhqiihy9j79wxi9xbih8jk0p9r48c2q3iyy"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-types-urllib3))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python/typeshed";)
(synopsis "Typing stubs for requests")
(description "This package provides typing stubs for requests.")
@@ -36085,6 +36172,7 @@ Python, with static types.")
(base32
"0zcipjdnbnc8ymk8mh9n5mypa0qr03rqj98lbmahldcdrrap6md1"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python/typeshed";)
(synopsis "Typing stubs for urllib3")
(description "This package provides typing stubs for urllib3.")
@@ -36102,6 +36190,7 @@ Python, with static types.")
"1vdwp1jjg27b22qxgm49v21nb8vm1iki3bfsm0fnq2rsz5alfwz2"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-importlib-resources))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/JelleZijlstra/typeshed_client";)
(synopsis "Library for accessing stubs in typeshed")
(description
@@ -36518,7 +36607,9 @@ than trying to just split strings.")
python-pytest-timeout
python-mock
python-numpy
- python-psutil))
+ python-psutil
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/explosion/srsly";)
(synopsis "Serialization utilities for Python")
(description "This package bundles some of the best Python serialization
@@ -36770,7 +36861,7 @@ objects.")
(base32
"1irw4sqrsgpc0ibxdv1hlx0d0jr1fqs48bj6mpfylzqkag9ywlfj"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/cgdeboer/iteround";)
(synopsis "Sum-safe rounding for Iterables")
(description "Iteround is a standard library sum-safe rounding library for
@@ -36884,7 +36975,10 @@ object, which can be useful if you want to force your
objects into a table.")
python-mock
python-numpy
python-pytest
- python-pyyaml))
+ python-pyyaml
+ python-setuptools
+ python-wheel
+ python-toml))
(home-page "https://github.com/seperman/deepdiff";)
(synopsis "Deep difference and search of any Python object/data")
(description
@@ -36913,7 +37007,9 @@ other.")
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
(native-inputs
(list python-setuptools-scm
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://deepmerge.readthedocs.io/en/latest/";)
(synopsis "Merge nested data structures")
(description
@@ -37365,7 +37461,7 @@ versa. Extended WKB/WKT are also supported.")
(base32
"1c0xx3p3lzrlyqhmccyq9c50f8v9pqk2992gb4nl50h2yy1m3s8v"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://nedbatchelder.com/code/cog";)
(synopsis "Content generation tool that leverages Python")
(description "Cog is a file generation tool. It allows using pieces of
@@ -37806,7 +37902,10 @@ path.")
python-ruamel.yaml
python-slugify
python-tornado
- tzdata-for-tests))
+ tzdata-for-tests
+ python-setuptools
+ python-wheel
+ python-toml))
(home-page "https://github.com/spanezz/staticsite";)
(synopsis "Static site generator")
(description "Statistic is a static site generator based on Markdown and
@@ -37899,8 +37998,9 @@ markdown-compliant strings.")
(base32
"1v5c9bim8af6g8kgxp2dhm96n5vkr8sqi56w0bdh1xy49v03lw3g"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-pillow))
+ (propagated-inputs (list python-pillow python-setuptools))
(inputs (list zbar))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/Polyconseil/zbarlight";)
(synopsis "Simple Python wrapper for the zbar barcode library")
(description "Zbarlight is a simple wrapper for the zbar library. It can
@@ -37919,6 +38019,7 @@ read all zbar supported codes.")
"0bqkrjxp2fbz34x3wxkxji39kxinypzg8q2994sibiay29mpipxb"))))
(build-system pyproject-build-system)
(inputs (list openssl))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://zeroc.com";)
(synopsis "RPC framework")
(description
diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm
index 687c20cd90..169010c1cd 100644
--- a/gnu/packages/qt.scm
+++ b/gnu/packages/qt.scm
@@ -3900,7 +3900,9 @@ Python.")
(list python-wrapper))
(propagated-inputs
(list python-tomli
- python-packaging))
+ python-packaging
+ python-setuptools
+ python-wheel))
(home-page "https://www.riverbankcomputing.com/software/sip/intro";)
(synopsis "Python binding creator for C and C++ libraries")
(description
diff --git a/gnu/packages/rpc.scm b/gnu/packages/rpc.scm
index b70214fa79..e7d19b1ef2 100644
--- a/gnu/packages/rpc.scm
+++ b/gnu/packages/rpc.scm
@@ -254,7 +254,7 @@ type information of gRPC.")
(inputs
(list abseil-cpp-20211102.0 c-ares grpc-for-python-grpcio openssl re2
zlib))
(native-inputs
- (list python-cython))
+ (list python-cython python-setuptools python-wheel))
(propagated-inputs
(list python-six))
(home-page "https://grpc.io";)
diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm
index 6a4368d59a..80dee15726 100644
--- a/gnu/packages/serialization.scm
+++ b/gnu/packages/serialization.scm
@@ -746,7 +746,9 @@ RPC system. Think JSON, except binary. Or think Protocol
Buffers, except faste
python-mypy
python-pytest
python-setuptools-scm
- python-versioneer))
+ python-versioneer
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-pyyaml python-tomli python-tomli-w))
(home-page "https://jcristharif.com/msgspec/";)
(synopsis "Fast serialization/validation library")
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 44cd036e4b..f5b65a531a 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -453,7 +453,9 @@ supported with @code{sphinx-issues}.")
(propagated-inputs (list python-docutils-0.15 python-sphinx-4))
(native-inputs
(list python-pytest
- python-pytest-regressions))
+ python-pytest-regressions
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/executablebooks/sphinx-panels";)
(synopsis "Sphinx extension for creating panels in a grid layout")
(description
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7089030fcc..e0af1a392d 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2098,7 +2098,7 @@ and fast file reading.")
;; Remove dataset with unclear license.
(lambda _
(delete-file "vega_datasets/_data/la-riots.csv"))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs (list python-pandas))
(home-page "https://github.com/altair-viz/vega_datasets";)
(synopsis "Example datasets used by Vega-related projects")
@@ -2143,6 +2143,7 @@ and Vega-Lite examples.")
python-jsonschema
python-numpy
python-pandas
+ python-setuptools
python-toolz
python-typing-extensions))
(native-inputs (list python-black
@@ -2202,7 +2203,8 @@ correlated samples from Markov Chain Monte Carlo (MCMC).")
(lambda _
;; Cython extensions have to be built before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
- (propagated-inputs (list python-cython python-numpy))
+ (propagated-inputs (list python-cython python-numpy python-setuptools
+ python-wheel))
(native-inputs (list python-nose))
(home-page "http://github.com/daleroberts/hdmedians";)
(synopsis "High-dimensional medians")
@@ -2253,7 +2255,9 @@ machine learning, computer vision, and high-dimensional
statistics.")
python-scipy
python-typing-extensions
python-xarray
- python-xarray-einstats))
+ python-xarray-einstats
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/arviz-devs/arviz";)
(synopsis "Exploratory analysis of Bayesian models")
(description
@@ -2518,7 +2522,9 @@ sampler for Markov chain Monte Carlo (MCMC).")
python-pytest
python-pytest-randomly
python-pytest-xdist
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page
(string-append "https://www.statsmodels.org/v"; version "/"))
(synopsis "Statistical modeling and econometrics in Python")
diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm
index fbfc4439db..4effb8aff7 100644
--- a/gnu/packages/terminals.scm
+++ b/gnu/packages/terminals.scm
@@ -114,6 +114,7 @@
#:use-module (gnu packages popt)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
@@ -254,8 +255,8 @@ managers.")
(substitute* "tests/pty_test.py"
(("python3") (search-input-file inputs
"/bin/python3"))))))))
(native-inputs
- ;; For tests.
- (list python-pytest))
+ (list python-pytest ; For tests.
+ python-setuptools python-wheel))
(home-page "https://asciinema.org";)
(synopsis "Terminal session recorder")
(description
diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm
index dce37f3df4..cb89d04bf5 100644
--- a/gnu/packages/time.scm
+++ b/gnu/packages/time.scm
@@ -285,6 +285,7 @@ datetime module, available in Python 2.3+.")
"1wg3f3imjq3snvjccv64h5498pqv9xz664xhni7bsh8mnay91p83"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-dateutil python-pytz))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/jmcantrell/python-dateutils";)
(synopsis "Various utilities for working with date and datetime objects")
(description
@@ -368,7 +369,7 @@ Python datetime objects.")
;; It's optional, remove this constrain where python-pytz is updated.
#:test-flags #~(list "-k" "not test_with_pytz")))
(native-inputs
- (list python-poetry-core python-pytest))
+ (list python-poetry-core python-pytest python-setuptools))
(propagated-inputs
(list python-cffi python-h3-3 python-numba python-numpy python-pytz))
(home-page "https://timezonefinder.michelfe.it/gui";)
diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm
index ab1483245f..0b3818e3cc 100644
--- a/gnu/packages/tor.scm
+++ b/gnu/packages/tor.scm
@@ -50,6 +50,7 @@
#:use-module (gnu packages glib)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
@@ -447,7 +448,8 @@ Potential client and exit connections are scrubbed of
sensitive information.")
"1542g6alycwlmvndxcijzn4d5lgycmxxb78gqd8qwgm9kw0fnr3q"))))
(build-system pyproject-build-system)
(native-inputs
- (list (list glib "bin"))) ; for glib-compile-schemas.
+ (list python-setuptools python-wheel
+ (list glib "bin"))) ; for glib-compile-schemas.
(inputs
(list python-fire
python-psutil
diff --git a/gnu/packages/tree-sitter.scm b/gnu/packages/tree-sitter.scm
index 2f6e6809d7..8f5bcb8827 100644
--- a/gnu/packages/tree-sitter.scm
+++ b/gnu/packages/tree-sitter.scm
@@ -32,6 +32,7 @@
#:use-module (gnu packages graphviz)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages node)
+ #:use-module (gnu packages python-build)
#:use-module (guix build-system cargo)
#:use-module (guix build-system gnu)
#:use-module (guix build-system pyproject)
@@ -89,7 +90,8 @@
name)))))))))
(inputs (list tree-sitter))
(native-inputs
- (list tree-sitter-python tree-sitter-javascript))
+ (list tree-sitter-python tree-sitter-javascript
+ python-setuptools python-wheel))
(home-page "https://github.com/tree-sitter/py-tree-sitter";)
(synopsis "Python bindings to the Tree-sitter parsing library")
(description "This package provides Python bindings to the
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 92c0acef3c..6f789ee248 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -6155,7 +6155,7 @@ video from a Wayland session.")
"1z9j3r9pm4rdynlmhgsgnwnnaqw5274yfy4kyillgd77msnpbhaw"))))
(build-system pyproject-build-system)
(native-inputs
- (list gettext-minimal pkg-config))
+ (list gettext-minimal pkg-config python-setuptools python-wheel))
(inputs
(list bash-minimal
python-pygobject
diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm
index a7f07ec0f6..4c8de9fa32 100644
--- a/gnu/packages/vim.scm
+++ b/gnu/packages/vim.scm
@@ -72,6 +72,7 @@
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
@@ -1026,7 +1027,12 @@ through its msgpack-rpc API.")
(base32
"00kxlb3f1k7iaxzpsr07scavmnyg8c1jmicmr13mfk2lcdac6g2b"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-psutil python-pynvim))
+ (native-inputs
+ (list python-wheel))
+ (propagated-inputs
+ (list python-psutil
+ python-pynvim
+ python-setuptools))
(home-page "https://github.com/mhinz/neovim-remote";)
(synopsis "Control nvim processes using `nvr` commandline tool")
(description "This package provide a `nvr` command, which can open File in
diff --git a/guix/build-system/pyproject.scm b/guix/build-system/pyproject.scm
index 9a27ebee35..28fd897494 100644
--- a/guix/build-system/pyproject.scm
+++ b/guix/build-system/pyproject.scm
@@ -52,7 +52,12 @@
"Return the default Python package."
;; Lazily resolve the binding to avoid a circular dependency.
(let ((python (resolve-interface '(gnu packages python))))
- (module-ref python 'python-toolchain)))
+ ;; We are using python-sans-pip-wrapper, because it does not contain
+ ;; setuptools. This allows us to skip the dependency on setuptools for
+ ;; packages which don’t need it. And it allows us to more easily swap
+ ;; out setuptools if a different version is required.
+ ;; Using python-toolchain here might cause dependency cycles.
+ (module-ref python 'python-sans-pip-wrapper)))
(define sanity-check.py
(search-auxiliary-file "python/sanity-check.py"))
- 08/222: gnu: sssd: Import ensure-no-mtimes-pre-1980., (continued)
- 08/222: gnu: sssd: Import ensure-no-mtimes-pre-1980., guix-commits, 2024/11/01
- 10/222: build-system/pyproject: Use TOML parser., guix-commits, 2024/11/01
- 11/222: gnu: python-pytest-xdist: Disable failing test., guix-commits, 2024/11/01
- 21/222: gnu: python-markdown-it-py: Update to 3.0.0., guix-commits, 2024/11/01
- 38/222: gnu: python-argcomplete: Add missing input., guix-commits, 2024/11/01
- 42/222: gnu: python-pynacl: Add missing inputs., guix-commits, 2024/11/01
- 30/222: gnu: python-traitlets: Update to 5.14.1., guix-commits, 2024/11/01
- 40/222: gnu: java-testng: Disable one test., guix-commits, 2024/11/01
- 48/222: gnu: python-joblib: Add missing inputs., guix-commits, 2024/11/01
- 09/222: guix: toml: Add TOML parser., guix-commits, 2024/11/01
- 05/222: build-system/pyproject: Use python-sans-pip-wrapper as default-python.,
guix-commits <=
- 15/222: gnu: Add missing import., guix-commits, 2024/11/01
- 18/222: gnu: python-typing-extensions: Update to 4.10.0., guix-commits, 2024/11/01
- 14/222: gnu: Add python-setuptools/python-wheel where necessary., guix-commits, 2024/11/01
- 28/222: gnu: Add python-pytest-mypy-testing., guix-commits, 2024/11/01
- 45/222: gnu: python-mistletoe: Add missing inputs., guix-commits, 2024/11/01
- 07/222: gnu: criu: Remove temporary workaround., guix-commits, 2024/11/01
- 13/222: doc: Document new options for pyproject-build-system., guix-commits, 2024/11/01
- 19/222: gnu: Add setuptools/wheel to more Python packages., guix-commits, 2024/11/01
- 43/222: gnu: python-pytest-arraydiff: Add missing inputs., guix-commits, 2024/11/01
- 46/222: gnu: python-mysqlclient: Add missing inputs., guix-commits, 2024/11/01