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branch r-team updated (c56ab300d4 -> 81a33ff5dc)


From: guix-commits
Subject: branch r-team updated (c56ab300d4 -> 81a33ff5dc)
Date: Wed, 27 Nov 2024 11:07:13 -0500 (EST)

rekado pushed a change to branch r-team
in repository guix.

    from c56ab300d4 gnu: r-bamutils: Add test inputs and disable tests.
     new f159fbffaf gnu: r-minfi: Disable tests.
     new b24217a6cf gnu: r-dalex: Add test inputs.
     new b4f682b811 gnu: r-untb: Add missing inputs and disable vignettes.
     new d739a3a477 gnu: r-enmix: Add missing inputs.
     new aaacb677f9 gnu: r-ewastools: Add missing inputs.
     new 1edaf3f6ad gnu: r-ihw: Add missing inputs.
     new a4c4ce18d8 gnu: r-celldex: Disable tests.
     new 92cdb443b5 gnu: r-haplo-stats: Fix vignettes.
     new c11fcea3e0 gnu: r-rcmdcheck: Add missing inputs.
     new 6b753520d7 gnu: r-hdwgcna: Add missing inputs.
     new adadaa896f gnu: r-devtools: Add missing input.
     new 15c5296ab3 gnu: r-kmer: Add missing input.
     new 1588bab4dc gnu: Add r-plotmo.
     new 3e6d6928d5 gnu: r-openmx: Add missing input.
     new 00bd1b8c24 gnu: Add r-earth.
     new bafe92d06a gnu: r-parsnip: Add missing input.
     new 24586a590f gnu: r-caretensemble: Add missing inputs.
     new da3e346e91 gnu: r-anpan: Add missing input.
     new 4035164ff7 gnu: r-pando: Add missing inputs and disable tests.
     new 24c5891da9 gnu: r-curatedtcgadata: Add missing input.
     new 2d7636063e gnu: Add r-hgu95a-db.
     new a3590dc600 gnu: Add r-gsvadata.
     new 64dc84f097 gnu: r-gsva: Add missing input.
     new ff484e06dd gnu: r-doubletcollection: Add missing input and disable 
tests.
     new 1459a394bc gnu: r-monocle: Disable tests.
     new bd68898519 gnu: r-tradeseq: Add missing inputs.
     new 27f646fb9b gnu: Add r-msbackendsql.
     new d0d6b920b3 gnu: r-msexperiment: Add missing inputs.
     new 8b852c3792 import: utils: Wrap function names in @code.
     new b043361961 import/cran: Set HOME when R.rsp is among inputs.
     new e9968a91ab import/cran: Detect test and vignette inputs.
     new e888c0441e gnu: r-annotationhubdata: Delete bad tests.
     new 8ff783d521 gnu: r-category: Add missing inputs.
     new bbb6cb993b gnu: r-stringdb: Add missing input and disable tests.
     new 42d8738360 gnu: r-damefinder: Add missing input.
     new 6e4bb8c24e gnu: r-biocpkgtools: Disable tests.
     new 909aa7567d gnu: r-gtrack: Add missing input.
     new fbd96618f7 gnu: r-chromstar: Add missing input.
     new 1e3804cea0 gnu: r-monocle3: Update to 1.3.7.
     new 87f92f8724 gnu: r-gqtlbase: Disable tests.
     new 2aa21f18e8 gnu: r-ncdfflow: Delete bad tests.
     new 95abd0e8db gnu: r-flowworkspace: Disable tests.
     new 3e53201983 gnu: r-flowclust: Add missing input.
     new a3ee82ab63 gnu: r-riboprofiling: Add missing input.
     new 81a33ff5dc gnu: r-psmatch: Add missing inputs.

The 45 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm   | 364 ++++++++++++++++++++++++++++++----------
 gnu/packages/bioinformatics.scm |  27 ++-
 gnu/packages/cran.scm           |  84 ++++++++--
 gnu/packages/statistics.scm     |   2 +-
 guix/import/cran.scm            | 140 ++++++++++++++--
 guix/import/utils.scm           |  18 +-
 tests/import-utils.scm          |   6 +-
 7 files changed, 510 insertions(+), 131 deletions(-)



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