[PATCH] Add r-acsnminer.

[Ricardo Wurmus]

>From ee0a863d6b070aa341dd0d404115dfb046db4079 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Thu, 17 Dec 2015 16:50:03 +0100
Subject: [PATCH 1/3] gnu: Add r-gtable.

* gnu/packages/statistics.scm (r-gtable): New variable.
---
 gnu/packages/statistics.scm | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 8beb8c8..21e5c60 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1439,3 +1439,22 @@ the header files from the templated Armadillo library.")
     ;; later, as is the rest of 'Rcpp'.
     (license license:gpl2+)))
 
+(define-public r-gtable
+  (package
+    (name "r-gtable")
+    (version "0.1.2")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "gtable" version))
+              (sha256
+               (base32
+                "0k9hfj6r5y238gqh92s3cbdn34biczx3zfh79ix5xq0c5vkai2xh"))))
+    (properties `((upstream-name . "gtable")))
+    (build-system r-build-system)
+    (home-page "http://cran.r-project.org/web/packages/gtable";)
+    (synopsis "Arrange grobs in tables")
+    (description
+     "This package provides tools to make it easier to work with tables of
+grobs.")
+    (license license:gpl2+)))
+
-- 
2.1.0

>From 2b9a8ba7b6cf400b90fc76361a470976715e1c32 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Thu, 17 Dec 2015 16:50:47 +0100
Subject: [PATCH 2/3] gnu: Add r-gridextra.

* gnu/packages/statistics.scm (r-gridextra): New variable.
---
 gnu/packages/statistics.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 21e5c60..e62924b 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1458,3 +1458,27 @@ the header files from the templated Armadillo library.")
 grobs.")
     (license license:gpl2+)))
 
+(define-public r-gridextra
+  (package
+    (name "r-gridextra")
+    (version "2.0.0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "gridExtra" version))
+              (sha256
+               (base32
+                "19yyrfd37c5hxlavb9lca9l26wjhc80rlqhgmfj9k3xhbvvpdp17"))))
+    (properties `((upstream-name . "gridExtra")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-gtable" ,r-gtable)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr))) ;for building vignettes
+    (home-page "https://github.com/baptiste/gridextra";)
+    (synopsis "Miscellaneous functions for \"Grid\" graphics")
+    (description
+     "This package provides a number of user-level functions to work with
address@hidden graphics, notably to arrange multiple grid-based plots on a page,
+and draw tables.")
+    (license license:gpl2+)))
+
-- 
2.1.0

>From c18418c6ff9d136b38547185c5ab395d828483bf Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Thu, 17 Dec 2015 16:51:28 +0100
Subject: [PATCH 3/3] gnu: Add r-acsnminer.

* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
---
 gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9eb8a07..5d93c52 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3298,6 +3298,32 @@ BLAST, KEGG, GenBank, MEDLINE and GO.")
     ;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+)
     (license (list license:ruby license:lgpl2.1+ license:gpl2+ ))))
 
+(define-public r-acsnminer
+  (package
+    (name "r-acsnminer")
+    (version "0.15.11")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "ACSNMineR" version))
+              (sha256
+               (base32
+                "1dl4drhjyazwm9wxlm8yfppwvvj4h6jxwmz8kfw5bxpb3jdnsqvy"))))
+    (properties `((upstream-name . "ACSNMineR")))
+    (build-system r-build-system)
+    (propagated-inputs
+      `(("r-ggplot2" ,r-ggplot2)
+        ("r-gridextra" ,r-gridextra)))
+    (home-page "http://cran.r-project.org/web/packages/ACSNMineR";)
+    (synopsis "Gene enrichment analysis")
+    (description
+     "This package provides tools to compute and represent gene set enrichment
+or depletion from your data based on pre-saved maps from the @dfn{Atlas of
+Cancer Signalling Networks} (ACSN) or user imported maps.  The gene set
+enrichment can be run with hypergeometric test or Fisher exact test, and can
+use multiple corrections.  Visualization of data can be done either by
+barplots or heatmaps.")
+    (license license:gpl2+)))
+
 (define-public r-qtl
  (package
   (name "r-qtl")
-- 
2.1.0