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Re: 01/02: gnu: blast+: Update to 2.6.0.


From: Ben Woodcroft
Subject: Re: 01/02: gnu: blast+: Update to 2.6.0.
Date: Sat, 8 Jul 2017 14:14:23 +1000
User-agent: Mozilla/5.0 (X11; Linux x86_64; rv:52.0) Gecko/20100101 Thunderbird/52.1.1



On 07/07/17 09:39, Leo Famulari wrote:
On Fri, Jul 07, 2017 at 09:33:26AM +1000, Ben Woodcroft wrote:
Hi Ludo,


On 07/07/17 02:54, Ludovic Courtès wrote:
Hi Ben,

address@hidden (Ben Woodcroft) skribis:

commit 18dea67dc3a42d782b34b551304748346f173184
Author: Ben Woodcroft <address@hidden>
Date:   Mon Jul 3 23:00:14 2017 +1000

      gnu: blast+: Update to 2.6.0.
      * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
      [origin]: Remove bundled pcre.
      [arguments]: Replace paths in run_with_lock.c.  Configure with pcre.
      [inputs]: Add pcre, perl, python.
[...]

+              (patches (search-patches "blast+-fix-makefile.patch"))
You forgot this patch in the commit.  Could you please commit it?

We may have to revert it because it’s currently blocking evaluations on
hydra.gnu.org: <https://hydra.gnu.org/jobset/gnu/master#tabs-errors>.
Gah, apologies. I will fix this in ~12 hours time. Anyone should feel free
to revert it in the meantime as I am unable to until then.
ben
I reverted it in the meantime.
Thanks Leo. I've just pushed an updated commit 4732e6ee84fea4e58b8a62cad054b10966f4f6e6 with the patch.

ben




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