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[bug#56098] [PATCH 1/2] gnu: Add r-microbiome.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#56098] [PATCH 1/2] gnu: Add r-microbiome. |
Date: |
Sun, 19 Jun 2022 22:42:00 +0200 |
* gnu/packages/bioconductor.scm (r-microbiome): New variable.
---
gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..54280a26f6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8100,6 +8100,44 @@ (define-public r-bumphunter
studies.")
(license license:artistic2.0)))
+(define-public r-microbiome
+ (package
+ (name "r-microbiome")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "microbiome" version))
+ (sha256
+ (base32
+ "1z9arkjp5xszlg07mzb4p163i74jfbd9p4gbwv5syivnpl040k12"))))
+ (properties `((upstream-name . "microbiome")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-compositions
+ r-dplyr
+ r-ggplot2
+ r-phyloseq
+ r-reshape2
+ r-rtsne
+ r-scales
+ r-tibble
+ r-tidyr
+ r-vegan))
+ (native-inputs (list r-knitr))
+ (home-page "https://microbiome.github.io/microbiome/")
+ (synopsis "Tools for microbiome analysis")
+ (description
+ "The @code{microbiome} facilitates @code{phyloseq} exploration and
analysis
+of taxonomic profiling data. This package provides tools for the
manipulation,
+statistical analysis, and visualization of taxonomic profiling data. In
addition
+to targeted case-control studies, the @code{microbiome} facilitates scalable
+exploration of population cohorts. This package supports the independent
+@code{phyloseq} data format and expands the available toolkit in order to
+facilitate the standardization of the analyses and the development of best
+practices.")
+ (license license:bsd-2)))
+
(define-public r-minfi
(package
(name "r-minfi")
base-commit: d6bd483cd53cedc8da39fcc6c419f7241080ed21
--
2.36.1