[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[bug#56265] [PATCH] gnu: Add r-bac.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#56265] [PATCH] gnu: Add r-bac. |
Date: |
Mon, 27 Jun 2022 23:16:20 +0200 |
* gnu/packages/bioconductor.scm (r-bac): New variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..1e86f02128 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,30 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-bac
+ (package
+ (name "r-bac")
+ (version "1.56.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BAC" version))
+ (sha256
+ (base32
+ "0dkw7438d2sf6nb577dnzija54qs0nhlr47lb73li60fhlnvqmh2"))))
+ (properties `((upstream-name . "BAC")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/BAC")
+ (synopsis "Bayesian analysis of Chip-chip experiment")
+ (description
+ "This package uses a Bayesian hierarchical model to detect enriched
regions
+from ChIP-chip experiments. The common goal in analyzing this ChIP-chip data
is
+to detect DNA-protein interactions from ChIP-chip experiments. The @code{BAC}
+package has mainly been tested with @code{Affymetrix} tiling array data.
However,
+we expect it to work with other platforms (e.g. Agilent, Nimblegen, cDNA,
etc.).
+Note that @code{BAC} does not deal with normalization, so you will have to
+normalize your data before hands.")
+ (license license:artistic2.0)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
--
2.36.1
[Prev in Thread] |
Current Thread |
[Next in Thread] |
- [bug#56265] [PATCH] gnu: Add r-bac.,
Mădălin Ionel Patrașcu <=