Re: [igraph] Problems compiling igraph 0.6 on MacOS X

[Bob Pap]

Hi Tamás,

I seem to have the same problem compiling the recent snapshot on OSX 10.8.2 (R CMD install ~/Downloads/igraph_nightly_0.7-3053-20121105.tar.gz). I get errors (not always the same) with all the recent snapshots (igraph_nightly_0.6.1-3000-20121102.tar.gz  igraph_nightly_0.6.1-3005-20121103.tar.gz  igraph_nightly_0.7-3043-20121102.tar.gz    igraph_nightly_0.7-3050-20121103.tar.gz    igraph_nightly_0.7-3053-20121105.tar.gz). Do you know which is the latest snapshot to compile without problems? Am I in the wrong direction?  Many thanks for any help.

Kind regards,

Bob Pap

gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -DUSING_R -I. -Ics -Iglpk -Iglpk/amd -Iglpk/colamd -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DPACKAGE_VERSION=\"0.7\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fPIC  -g -O2  -c rinterface.c -o rinterface.o

rinterface.c: In function ‘R_igraph_get_shortest_paths’:

rinterface.c:3692: error: too few arguments to function ‘igraph_get_shortest_paths_dijkstra’

rinterface.c: In function ‘R_igraph_bipartite_game_gnp’:

rinterface.c:12012: warning: implicit declaration of function ‘igraph_bipartite_game_gnp’

rinterface.c: In function ‘R_igraph_bipartite_game_gnm’:

rinterface.c:12063: warning: implicit declaration of function ‘igraph_bipartite_game_gnm’

make: *** [rinterface.o] Error 1

ERROR: compilation failed for package ‘igraph’

* removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/igraph’

* restoring previous ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/igraph’

On 24 April 2012 22:26, Bob Pap <address@hidden> wrote:

Perfect! Many thanks, it worked with the build from 04.13.

On Tue, Apr 24, 2012 at 10:15 PM, Tamás Nepusz <address@hidden> wrote:

Dear Bob,

Thanks for the bug report; this is an error on our side. We have recently added a new argument to igraph_community_eb_get_merges in the C core and the R interface has not been updated yet. Please try an earlier nightly snapshot; any nightly build released before 19 April 2012 would do.

Best,
--
T.

On Tuesday, 24 April 2012 at 22:07, Bob Pap wrote:

> Dear all,
>
> I get the error below compiling igraph on MacOS X 10.7.3 (with command: R CMD install ~/Downloads/igraph_nightly_0.6-2694-20120421.tar.gz ). Could a guru please maybe point me in the right direction? Any help is appreciated (I need to use weighted betweeness measure that I understand is available in th enew version).
>
> Kind regards,
> Bob
>
> gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -DUSING_R -I. -Ics -Iglpk -Iglpk/amd -Iglpk/colamd -g -O2 -I/usr/include/libxml2 -g -O2 -I/usr/include/libxml2 -DNDEBUG -DPACKAGE_VERSION=\"0.6\" -DINTERNAL_ARPACK -DIGRAPH_THREAD_LOCAL=/**/ -fPIC -g -O2 -c rinterface.c -o rinterface.o
> rinterface.c: In function ‘R_SEXP_to_vector_complex_copy’:
> rinterface.c:2380: warning: passing argument 2 of ‘igraph_vector_complex_init_copy’ from incompatible pointer type
> rinterface.c: In function ‘R_SEXP_to_matrix_complex_copy’:
> rinterface.c:2393: warning: passing argument 2 of ‘igraph_vector_complex_init_copy’ from incompatible pointer type
> rinterface.c: In function ‘R_igraph_community_eb_get_merges’:
> rinterface.c:6177: warning: passing argument 3 of ‘igraph_community_eb_get_merges’ from incompatible pointer type
> rinterface.c:6177: warning: passing argument 4 of ‘igraph_community_eb_get_merges’ from incompatible pointer type
> rinterface.c:6177: error: too few arguments to function ‘igraph_community_eb_get_merges’
> make: *** [rinterface.o] Error 1
> ERROR: compilation failed for package ‘igraph’
> * removing ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/igraph’
> * restoring previous ‘/Library/Frameworks/R.framework/Versions/2.15/Resources/library/igraph’
>
>

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