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[PATCH 24/25] gnu: Add r-grohmm.
From: |
Ricardo Wurmus |
Subject: |
[PATCH 24/25] gnu: Add r-grohmm. |
Date: |
Wed, 21 Sep 2016 22:45:40 +0200 |
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f3843dd..07a5ff6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5389,6 +5389,32 @@ experimental designs is facilitated by a consistently
implemented sample
annotation infrastructure.")
(license license:artistic2.0)))
+(define-public r-grohmm
+ (package
+ (name "r-grohmm")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "groHMM" version))
+ (sha256
+ (base32
+ "1l9mcyzyc548114ysb9r0q7hgzw3yy7gpiahrzkzj6hblc4f1jyp"))))
+ (properties `((upstream-name . "groHMM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://github.com/Kraus-Lab/groHMM")
+ (synopsis "GRO-seq analysis pipeline")
+ (description
+ "This package provides a pipeline for the analysis of GRO-seq data.")
+ (license license:gpl3+)))
+
(define-public vsearch
(package
(name "vsearch")
--
2.9.3
- [PATCH 13/25] gnu: Add r-checkmate., (continued)
- [PATCH 13/25] gnu: Add r-checkmate., Ricardo Wurmus, 2016/09/21
- [PATCH 15/25] gnu: Add r-fail., Ricardo Wurmus, 2016/09/21
- [PATCH 16/25] gnu: Add r-batchjobs., Ricardo Wurmus, 2016/09/21
- [PATCH 17/25] gnu: Add r-annotationforge., Ricardo Wurmus, 2016/09/21
- [PATCH 18/25] gnu: Add r-rbgl., Ricardo Wurmus, 2016/09/21
- [PATCH 19/25] gnu: Add r-gseabase., Ricardo Wurmus, 2016/09/21
- [PATCH 20/25] gnu: Add r-category., Ricardo Wurmus, 2016/09/21
- [PATCH 21/25] gnu: Add r-gostats., Ricardo Wurmus, 2016/09/21
- [PATCH 22/25] gnu: Add r-shortread., Ricardo Wurmus, 2016/09/21
- [PATCH 23/25] gnu: Add r-systempiper., Ricardo Wurmus, 2016/09/21
- [PATCH 24/25] gnu: Add r-grohmm.,
Ricardo Wurmus <=
- [PATCH 25/25] gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene., Ricardo Wurmus, 2016/09/21
- Re: [PATCH 01/25] gnu: Add r-hwriter., Ludovic Courtès, 2016/09/24