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[h5md-user] subsystems with varying number of particles


From: Konrad Hinsen
Subject: [h5md-user] subsystems with varying number of particles
Date: Thu, 12 Dec 2013 08:56:33 +0100

Felix Höfling writes:

 > In commit a3ee98a, the fill value of the particle ID has been given a
 > meaning which I find very useful.

Where can I find those commits, i.e. where is the repository backing
the Web site?

 > Just one question: what if there is no fill value defined? Does
 > H5Pget_fill_value() return the default value? I think it is 0 for Integer
 > types, which would conflict with regular particle IDs starting at 0.

The default fill value is whatever an all-zero bit pattern means for
the type of a given dataset. That's what H5Pget_fill_value() returns
if H5Pset_fill_value() has never been called for a dataset.

 > Is this an issue that needs to be addressed somehow?

If setting a fill value is a requirement for H5MD conformity, then
this should of course be in the specification.

Konrad.
-- 
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Konrad Hinsen
Centre de Biophysique Moléculaire, CNRS Orléans
Synchrotron Soleil - Division Expériences
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91192 Gif sur Yvette Cedex, France
Tel. +33-1 69 35 97 15
E-Mail: research AT khinsen DOT fastmail DOT net
http://dirac.cnrs-orleans.fr/~hinsen/
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