Strange lilypond behaviour

[Bertalan Fodor]

I'm trying to build lilypond-2.2.5 When the documentation is being built 
lilypond builds an erroneous file. But when invoking the new binary 
using the command

LILYPONDPREFIX=/netrel/build/lilypond-2.2.5/share/lilypond 
/netrel/build/lilypond-2.2.5/lily/out/lilypond-bin.exe 
/netrel/build/lilypond-2.2.5/Documentation/user/out-www/lily-753313481.ly

it's ok. Please see the files below and tell if you have ideas:

The ly file:
% Generated by lilypond-book
% Options: [relative=2,verbatim,linewidth,raggedright]

\paper {
   linewidth = 160 \mm
  
   indent = 0.0\mm
   raggedright = ##t
}
\score{
   \notes\relative c''{
       c-2
\stemUp
f
   }
}

The bad file:
% Generated by GNU LilyPond 2.2.5 (http://lilypond.org)
% at Thu Aug  5 14:40:49 2004   
\def\lilypondtagline{Engraved by LilyPond (version 2.2.5)}
\def\lilypondpaperinterscoreline{4.0}%
\def\lilypondpaperin{25.4}%
\def\lilypondpaperoutputscale{1.75729901757299}%
\def\lilypondpaperhead-sep{4.0}%
\def\lilypondpaperstaffspace{1.75729901757299}%
\def\lilypondpaperhsize{210.0}%
\def\lilypondpapercm{10.0}%
\def\lilypondpaperblotdiameter{0.123010931230109}%
\def\lilypondpaperpapersizename{a4}%
\def\lilypondpaperbottom-margin{6.0}%
\def\lilypondpaperstaffheight{7.02919607029196}%
\def\lilypondpaperunit{mm}%
\def\lilypondpaperpapersize{a4}%
\def\lilypondpaperstaff-space{1.75729901757299}%
\def\lilypondpapertop-margin{5.0}%
\def\lilypondpaperpt{0.351459803514598}%
\def\lilypondpaperledgerlinethickness{0.351459803514598}%
\def\lilypondpaperfoot-sep{4.0}%
\def\lilypondpaperlinethickness{0.175729901757299}%
\def\lilypondpaperlinewidth{160.0}%
\def\lilypondpapervsize{297.9}%
\def\lilypondpapermm{1.0}%
\def\lilypondpaperindent{0.0}%
\def\scaletounit{ 2.83464566929134 mul }%
\ifx\lilypondstart\undefined
 \input lilyponddefs
\fi
\outputscale = \lilypondpaperoutputscale\lilypondpaperunit
\lilypondstart
\lilypondspecial
\lilypondpostscript
\font\magfontOHTEBomMMBo=feta20 scaled 1000
\font\magfontGHTEBomMMBo=parmesan20 scaled 1000
\font\magfontCRUEBomGNBo=feta-nummer6 scaled 1020
\leavevmode
\scoreshift = 006.0000 \outputscale
\lilypondifundefined{lilypondscoreshift}%
 {}%
 {\advance\scoreshift by -\lilypondscoreshift}%
\lybox{016.1820}{012.0000}{%
\lyitem{-08.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-07.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-06.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-05.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-04.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-05.5000}{008.7500}{\magfontOHTEBomMMBo\char62 }%
\lyitem{-03.3500}{008.9811}{\magfoontOHTEBomMMBo\char144 }%
\lyitem{-05.5000}{008.7500}{\magfontOHTEBomMMBo\char62 }%
\lyitem{-03.3500}{008.9811}{\magfontCRUEBomGNBo\hbox{2}}%
\lyitem{-06.0000}{008.8150}{\embeddedps{000.0650 000.0650 003.0000 
000.3122 000.0700 draw_round_box}}%
\lyitem{-04.0000}{012.4660}{\magfontOHTEBomMMBo\char62 }%
\lyitem{-06.0000}{013.7170}{\embeddedps{000.0650 000.0650 -02.1878 
004.5000 000.0700 draw_round_box}}%
}%
\lilypondend

The good file:
% Generated by GNU LilyPond 2.2.5 (http://lilypond.org)
% at Thu Aug  5 14:55:31 2004   
\def\lilypondtagline{Engraved by LilyPond (version 2.2.5)}
\def\lilypondpapercm{10.0}%
\def\lilypondpaperin{25.4}%
\def\lilypondpaperstaff-space{1.75729901757299}%
\def\lilypondpaperledgerlinethickness{0.351459803514598}%
\def\lilypondpaperfoot-sep{4.0}%
\def\lilypondpaperlinethickness{0.175729901757299}%
\def\lilypondpapervsize{297.9}%
\def\lilypondpapermm{1.0}%
\def\lilypondpaperblotdiameter{0.123010931230109}%
\def\lilypondpaperunit{mm}%
\def\lilypondpaperinterscoreline{4.0}%
\def\lilypondpaperoutputscale{1.75729901757299}%
\def\lilypondpaperhead-sep{4.0}%
\def\lilypondpaperstaffspace{1.75729901757299}%
\def\lilypondpaperhsize{210.0}%
\def\lilypondpaperpapersizename{a4}%
\def\lilypondpaperpt{0.351459803514598}%
\def\lilypondpaperbottom-margin{6.0}%
\def\lilypondpaperstaffheight{7.02919607029196}%
\def\lilypondpaperpapersize{a4}%
\def\lilypondpaperlinewidth{160.0}%
\def\lilypondpaperindent{0.0}%
\def\lilypondpapertop-margin{5.0}%
\def\scaletounit{ 2.83464566929134 mul }%
\ifx\lilypondstart\undefined
 \input lilyponddefs
\fi
\outputscale = \lilypondpaperoutputscale\lilypondpaperunit
\lilypondstart
\lilypondspecial
\lilypondpostscript
\font\magfontAEREBomMMBo=feta20 scaled 1000
\font\magfontSDREBomMMBo=parmesan20 scaled 1000
\font\magfontMMSEBomGNBo=feta-nummer6 scaled 1020
\leavevmode
\scoreshift = 006.0000 \outputscale
\lilypondifundefined{lilypondscoreshift}%
 {}%
 {\advance\scoreshift by -\lilypondscoreshift}%
\lybox{016.1820}{012.0000}{%
\lyitem{-08.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-07.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-06.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-05.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-04.0000}{000.0000}{\lyvrule{000.0000}{016.1820}{000.0500}{000.0500}}%
\lyitem{-04.0000}{012.4660}{\magfontAEREBomMMBo\char62 }%
\lyitem{-06.0000}{013.7170}{\embeddedps{000.0650 000.0650 -02.1878 
004.5000 000.0700 draw_round_box}}%
\lyitem{-06.0000}{005.0500}{\magfontAEREBomMMBo\char150 }%
\lyitem{-07.0000}{000.8500}{\magfontAEREBomMMBo\char144 }%
\lyitem{-05.5000}{008.7500}{\magfontAEREBomMMBo\char62 }%
\lyitem{-03.3500}{008.9811}{\magfontMMSEBomGNBo\hbox{2}}%
\lyitem{-06.0000}{008.8150}{\embeddedps{000.0650 000.0650 003.0000 
000.3122 000.0700 draw_round_box}}%
}%
\lilypondend