Hi,
I am interested in sharing a new type of workflow on myExperiment.
I am working on a (Java) tool to describe a protocol as a template
that contains experimental variables.
This is designed to make it easy for scientists to define a "protocol
model" and capture their experimental metadata.
See http://trac.openmicroscopy.org.uk/shoola/wiki/OmeroEditor (and
watch the demo movie for a good overview).
This project is in an early stage, and I am currently changing the XML
file format for the software, but I would like to work towards sharing
of protocol files in as many ways as possible, including publishing on
myexperiment.
I am interested to hear that you "have" Usefulchem EXPLANS, as I am
thinking of defining protocols in a similar layout (although the
variables will be in context, rather than at the end). Can you give
any more details of how myExperiment handles EXPLANS, what an EXPLAN
file is etc?
Many thanks,
Will.
The myExperiment team is very pleased to announce that myExperiment
can now store any type of workflow, not just Taverna ones. This
means that you can upload any file as a workflow which can then be
shared, discovered, downloaded, tagged, rated, commented on, added to
packs and so on.
We already have some Trident workflows, and some experimental plans
from chemistry (Usefulchem EXPLANS). You can upload your own types of
workflows by going to the upload workflow page (you may be asked to
log in). If we can't automatically detect the type of workflow and
infer data from it (like title and description) you can provide this
by selecting the "Enter custom metadata" option in step 2.
Note that we currently provide extended support for Taverna 1
workflows only - we can automatically detect the type, parse
title/description metadata, generate preview images, view the
internals and enact these workflows all directly in myExperiment. In
the coming months we aim to work with our user communties to provide
extended support for other types of workflows.
If you would like to get involved in providing extended support for
other types of workflows then please contact us. We are keen to work
with you in getting myExperiment to support as many other workflows
types as possible.
Thanks again for all your support!
The myExperiment Team
http://www.myexperiment.org/announcements/20
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