Danius - thanks! That's really cool -and the correct answer :)
It looks like maybe with a few tweaks we could use RDF as a database
Are there "user friendly" interfaces out there to run queries? Or
maybe someone can write an interface that does something simple
like what is the solubility of -dropdown menu of solutes- in -
dropdown menu of solvents-
A big obstacle for getting people (at least the people I talk to)
to use RDF is it is hard to show a concrete example of a use.
You've convinced me with this example but to convince my friends a
little dropdown interface to play with would seal the deal I think.
Jean-Claude
On Tue, Nov 4, 2008 at 12:07 PM, Danius Michaelides
<address@hidden> wrote:
On Fri, 31 Oct 2008, Jean-Claude Bradley wrote:
Jeremy - Pierre has converted our solubility measurements to RDF
triples -
does that make it easier to use Taverna workflows and myExperiment
to ask
questions like - "what are the compounds that have a solubility of
2-3 molar
in methanol?"
http://usefulchem.blogspot.com/2008/10/rdf-triples-for-open-
notebook-science.html
To check the RDF out, I loaded it into Jena and used SPARQL to answer
your question:
PREFIX chem: <http://usefulchem.blogspot.com/ontology/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
SELECT ?compound
WHERE { ?r rdf:type chem:Result .
?r chem:solute ?compound .
?r chem:solvent <compound:methanol> .
?r chem:concentration ?conc .
FILTER ((?conc >= 2) && (?conc <=3))
}
Which gave:
-------------------------
| compound |
=========================
| <compound:o_vanillin> |
-------------------------
I did, however, have to change the rdf:datatype="chem:Molar" to
rdf:datatype="&xsd;decimal"
(together with the entity definition for xsd) inorder to get the
filtering
to work, as "chem:Molar" isnt correct syntax.
Danius
On Fri, Oct 31, 2008 at 12:17 PM, Frey J.G. <address@hidden>
wrote:
We are thinking this way but not perhaps leaving it up to the user
in that
we will try and make the links automated. But this keeps plans and
instances separated as they are different types of 'thing' but ones
which
should be closely linked.
Jeremy
On 31/10/2008 15:55, "Jean-Claude Bradley"
<address@hidden>
wrote:
Jeremy - so basically the recording of the instances are separate from
myExperiment and up to the user - and this will always be the case?
Jean-Claude
On Thu, Oct 30, 2008 at 6:25 PM, Frey J.G. <address@hidden>
wrote:
In our idea of MyExperiment meets the Blog, the plans/protocols are
made
available via MyExperiment but the results of applying them are
stored/shared via the Blog & ELN systems, all of course cross-linked
Jeremy
On 30/10/2008 21:10, "Jean-Claude Bradley"
<address@hidden>
wrote:
Dave - is there a way to store instances of the execution of a
protocol?
For example this is an instance of a general protocol that was
repeated
with different chemicals and times
http://usefulchem.wikispaces.com/RESULT0001
On Mon, Oct 27, 2008 at 7:12 PM, David De Roure <address@hidden>
wrote:
Hi Giovanni
You can share anything - Makefiles, matlab scripts, R scripts,
whatever.
One of the things that makes myExperiment a "virtual research
environment"
rather than a social networking site is that it has support for the
particular research objects that people are using - we've focused on
workflows and experiment plans just now. So at present there's no
special
support for makefiles (eg how to visualise them, search them, tag
them or
execute them), though in fact this is something the team has
discussed as we
have long recognised the relationship between makefiles and
workflows. If
there is a demand for makefile support we would be pleased to work
with
people to develop this.
Thanks
-- Dave
-----Original Message-----
From: Giovanni Marco Dall'Olio [mailto:address@hidden
Sent: 27 October 2008 22:58
To: David De Roure
Cc: myexperiment
Subject: Re: [Myexperiment-discuss] Upload any type of Workflow you
want...
On Thu, Oct 23, 2008 at 12:39 AM, David De Roure
<address@hidden>
wrote:
The myExperiment team is very pleased to announce that myExperiment
can
now
store any type of workflow, not just Taverna ones. This means that
you
can
upload any file as a workflow which can then be shared, discovered,
downloaded, tagged, rated, commented on, added to packs and so on.
great :)
If you would like to get involved in providing extended support for
other
types of workflows then please contact us. We are keen to work with
you
in
getting myExperiment to support as many other workflows types as
possible.
sorry if this question has already been asked... does myExperiment
support makefiles or automated builds-like systems?
Thanks again for all your support!
The myExperiment Team
http://www.myexperiment.org/announcements/20
_______________________________________________
Myexperiment-discuss mailing list
address@hidden
http://lists.nongnu.org/mailman/listinfo/myexperiment-discuss
--
-----------------------------------------------------------
My Blog on Bioinformatics (italian): http://bioinfoblog.it
_______________________________________________
Myexperiment-discuss mailing list
address@hidden
http://lists.nongnu.org/mailman/listinfo/myexperiment-discuss
--
Jean-Claude Bradley, Ph. D.
E-Learning Coordinator for the College of Arts and Sciences
Associate Professor of Chemistry
Drexel University
http://drexel-coas-elearning.blogspot.com
http://drexel-coas-talks-mp3-podcast.blogspot.com/
http://usefulchem.blogspot.com
--
Jean-Claude Bradley, Ph. D.
E-Learning Coordinator for the College of Arts and Sciences
Associate Professor of Chemistry
Drexel University
http://drexel-coas-elearning.blogspot.com
http://drexel-coas-talks-mp3-podcast.blogspot.com/
http://usefulchem.blogspot.com