[Swarm-Support] Installing Swarm on CentOS 5.2 AMD64 box

[Gary Polhill]

Hi,

I've run into difficulties compiling Swarm (retrieved from CVS today-20081029) 
on a CentOS 5.2 AMD64 box. From my earlier experience on another 64-bit box, 
I've compiled 32 bit libraries for Tcl/Tk/BLT and HDF, and obtained a 32 bit 
version of java-1.4.2. I configured with:

env CC="gcc -m32" ../../../nongui/src/swarm/configure 
--build=i586-unknown-linux-gnu --with-defaultdir=/usr --enable-shared 
--with-tcl=$HOME/32bit/lib --with-tclinclude=$HOME/32bit/include 
--with-tk=$HOME/32bit/lib --with-tkinclude=$HOME/32bit/include 
--with-bltdir=$HOME/32bit --with-hdf5dir=$HOME/32bit 
--with-jdkdir=$HOME/32bit/j2sdk1.4.2_16 --prefix=$HOME/gui

When I run make, it bails building libcollections.so.3.0.1 with:

/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/Array.o' is
 incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/Collection.
o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/InputStream
.o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/Stream.o' i
s incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/List.o' is
incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/List_linked
.o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/List_mlinks
.o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/ListShuffle
r.o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/Map.o' is i
ncompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/OrderedSet.
o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/OutputStrea
m.o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/Set.o' is i
ncompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/Permutation
.o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/StringObjec
t.o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/collections
.o' is incompatible with i386 output
/usr/bin/ld: warning: i386:x86-64 architecture of input file `.libs/predicates.
o' is incompatible with i386 output
.libs/Array.o: In function `-[Array(c) __I:Creating]':
/home/policygrid/gui/build/swarm/src/collections/../../../../../nongui/src/swar
m/src/collections/Array.m:43: undefined reference to `Creating'
.libs/Array.o: In function `-[Array(c) __I:Setting]':
/home/policygrid/gui/build/swarm/src/collections/../../../../../nongui/src/swar
m/src/collections/Array.m:204: undefined reference to `Setting'
.libs/Array.o: In function `-[Array(c) __I:Using]':
/home/policygrid/gui/build/swarm/src/collections/../../../../../nongui/src/swar
m/src/collections/Array.m:327: undefined reference to `Using'
.libs/Array.o: In function `-[ArrayIndex(c) __I:Creating]':
/home/policygrid/gui/build/swarm/src/collections/../../../../../nongui/src/swar
m/src/collections/Array.m:536: undefined reference to `Creating'
.libs/Array.o: In function `-[ArrayIndex(c) __I:Using]':
/home/policygrid/gui/build/swarm/src/collections/../../../../../nongui/src/swar
m/src/collections/Array.m:537: undefined reference to `Using'
.libs/Array.o: In function `-[ArrayIndex(c) _compare:]':

 [...snip...]

.libs/predicates.o: In function `__objc_gnu_init':
/home/policygrid/gui/build/swarm/src/collections/../../../../../nongui/src/swar
m/src/collections/predicates.m:120: undefined reference to `__objc_exec_class'
.libs/Array.o:(.data.rel+0x10): undefined reference to `__objc_class_name_Proto
col'
.libs/Collection.o:(.data.rel+0x10): undefined reference to `__objc_class_name_
Object_s'
.libs/Collection.o:(.data.rel+0x18): undefined reference to `__objc_class_name_
CreateDrop_s'
.libs/Collection.o:(.data.rel+0x20): undefined reference to `__objc_class_name_
Protocol'
.libs/InputStream.o:(.data.rel+0x0): undefined reference to `__objc_class_name_
CreateDrop_s'
.libs/InputStream.o:(.data.rel+0x8): undefined reference to `__objc_class_name_
Protocol'
.libs/Stream.o:(.data.rel+0x0): undefined reference to `__objc_class_name_Creat
eDrop_s'
.libs/Stream.o:(.data.rel+0x10): undefined reference to `__objc_class_name_Prot
ocol'
.libs/List.o:(.data.rel+0x10): undefined reference to `__objc_class_name_Protoc
ol'
.libs/List_linked.o:(.data.rel+0x18): undefined reference to `__objc_class_name
_Protocol'
.libs/List_mlinks.o:(.data.rel+0x18): undefined reference to `__objc_class_name
_Protocol'
.libs/ListShuffler.o:(.data.rel+0x0): undefined reference to `__objc_class_name
_CreateDrop_s'
.libs/ListShuffler.o:(.data.rel+0x8): undefined reference to `__objc_class_name
_Protocol'
.libs/Map.o:(.data.rel+0x30): undefined reference to `__objc_class_name_Protoco
l'
.libs/OrderedSet.o:(.data.rel+0x10): undefined reference to `__objc_class_name_
Protocol'
.libs/OutputStream.o:(.data.rel+0x0): undefined reference to `__objc_class_name
_CreateDrop_s'
.libs/OutputStream.o:(.data.rel+0x8): undefined reference to `__objc_class_name
_Protocol'
.libs/Set.o:(.data.rel+0x18): undefined reference to `__objc_class_name_Protoco
l'
.libs/Permutation.o:(.data.rel+0x8): undefined reference to `__objc_class_name_
CreateDrop_s'
.libs/Permutation.o:(.data.rel+0x10): undefined reference to `__objc_class_name
_Protocol'
.libs/StringObject.o:(.data.rel+0x0): undefined reference to `__objc_class_name
_CreateDrop_s'
.libs/StringObject.o:(.data.rel+0x8): undefined reference to `__objc_class_name
_Protocol'
.libs/collections.o:(.data.rel+0x560): undefined reference to `__objc_class_nam
e_Module_super_'
.libs/collections.o:(.data.rel+0x568): undefined reference to `__objc_class_nam
e_Protocol'
.libs/predicates.o:(.data.rel+0x0): undefined reference to `__objc_class_name_P
rotocol'
collect2: ld returned 1 exit status
make[5]: *** [libcollections.la] Error 1
make[5]: Leaving directory `/home/policygrid/gui/build/swarm/src/collections'
make[4]: *** [all] Error 2
make[4]: Leaving directory `/home/policygrid/gui/build/swarm/src/collections'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/home/policygrid/gui/build/swarm/src'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/home/policygrid/gui/build/swarm/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/policygrid/gui/build/swarm'
make: *** [all] Error 2

It looks like my request for a 32-bit build has been ignored, and perhaps there 
are problems linking with the Obj-C library?
Any suggestions?

Thanks,
Gary



Gary Polhill
Research Scientist
The Macaulay Institute
Craigiebuckler
Aberdeen AB15 8QH
UK
Tel: +44 1224 395280
Fax: +44 1224 395010
e-mail: address@hidden
http://www.macaulay.ac.uk/
http://www.macaulay.ac.uk/fearlus/
http://www.policygrid.org/


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