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Re: [ESPResSo-users] [SPAM] Re: activate magnetostatics method DipolarDi


From: Rudolf Weeber
Subject: Re: [ESPResSo-users] [SPAM] Re: activate magnetostatics method DipolarDirectSumCpu
Date: Sun, 12 May 2019 22:17:52 +0200
User-agent: Mutt/1.9.4 (2018-02-28)

Hi,
I just re-ran gen-system.py from the paper's SI on 32 MPI ranks.
I used the Ubuntu 18.4 docker container from 
github.com/espressomd/docker.
That's the image with which the Scafacos integration for Espresso is tested 
continually.

I am not able to reproduce the error you reported.
Before you spend time on getting 
this resolved, I'd suggest the following;
* develop a small enough version of your simulation model so you are able to 
use DipolarDirectsumCpu. The paper from 2012 was done with that (although at 
that point still using TCL as scripting language).
* Once that works, and if it becomes clear you need a larger system, come back 
to P2NFFt and Scafacos.
As a first step, run the scripts from the SI with 8 mpi cores. Using more than 
that is often not useful with Espresso.

The issue you report might be a bug (unrelated to magnetostatic interactions 
which are not active in gen-system.py) in Espresso with a very low probability 
of ocurring. With Espresso 4.0.2 it is not yet possible to make a simulation 
fully deterministic, including the pseudo-random numbers used by the thermostat.
This will be possible with Espresso 4.1. Once that is close to release, I'll 
update the P2NFFT rrelated run-scripts at
https://github.com/RudolfWeeber/scafacos_espressomd_dipoles

Regards, Rudolf




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