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37/54: gnu: r-seqlogo: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
37/54: gnu: r-seqlogo: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:16 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 0006a664155c7d556ac773b254fd09205412c172
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:26:09 2021 +0200
gnu: r-seqlogo: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-seqlogo): Move from here...
* gnu/packages/bioconductor.scm (r-seqlogo): ...to here.
---
gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 23 -----------------------
2 files changed, 23 insertions(+), 23 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c9f72c5..b53267e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3652,6 +3652,29 @@ differential expression analysis, RNAseq data and
related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
+(define-public r-seqlogo
+ (package
+ (name "r-seqlogo")
+ (version "1.56.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "seqLogo" version))
+ (sha256
+ (base32
+ "02rpzjjfg5chlwwfbvv72cm78cg2vfmdwzars0cin9hz1hd7rnq1"))))
+ (properties `((upstream-name . "seqLogo")))
+ (build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/seqLogo")
+ (synopsis "Sequence logos for DNA sequence alignments")
+ (description
+ "seqLogo takes the position weight matrix of a DNA sequence motif and
+plots the corresponding sequence logo as introduced by Schneider and
+Stephens (1990).")
+ (license license:lgpl2.0+)))
+
(define-public r-seqpattern
(package
(name "r-seqpattern")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8f011f0..832de0b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8023,29 +8023,6 @@ used to obtain robust estimates of the predominant
fragment length or
characteristic tag shift values in these assays.")
(license license:bsd-3)))
-(define-public r-seqlogo
- (package
- (name "r-seqlogo")
- (version "1.56.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "seqLogo" version))
- (sha256
- (base32
- "02rpzjjfg5chlwwfbvv72cm78cg2vfmdwzars0cin9hz1hd7rnq1"))))
- (properties `((upstream-name . "seqLogo")))
- (build-system r-build-system)
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/seqLogo")
- (synopsis "Sequence logos for DNA sequence alignments")
- (description
- "seqLogo takes the position weight matrix of a DNA sequence motif and
-plots the corresponding sequence logo as introduced by Schneider and
-Stephens (1990).")
- (license license:lgpl2.0+)))
-
(define-public r-zlibbioc
(package
(name "r-zlibbioc")
- 35/54: gnu: r-sva: Move to (gnu packages bioconductor)., (continued)
- 35/54: gnu: r-sva: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 38/54: gnu: r-zlibbioc: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 41/54: gnu: r-rcas: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 44/54: gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 47/54: gnu: r-chipseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 45/54: gnu: r-annotationfilter: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 49/54: gnu: r-copywriter: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 50/54: gnu: r-methylkit: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 53/54: gnu: r-spp: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 52/54: gnu: r-geneoverlap: Move out of experiment section., guix-commits, 2021/05/31
- 37/54: gnu: r-seqlogo: Move to (gnu packages bioconductor).,
guix-commits <=
- 40/54: gnu: r-bamsignals: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 54/54: gnu: r-chipseeker: Move out of experiment section., guix-commits, 2021/05/31