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45/54: gnu: r-annotationfilter: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
45/54: gnu: r-annotationfilter: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:19 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit cc1dbea883fed7515130144a2413c49c11c5352f
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:26:17 2021 +0200
gnu: r-annotationfilter: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-annotationfilter): Move from here...
* gnu/packages/bioconductor.scm (r-annotationfilter): ...to here.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 26 --------------------------
2 files changed, 26 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index faa464d..a6d0350 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2009,6 +2009,32 @@ microarrays.")
annotation data packages using SQLite data storage.")
(license license:artistic2.0)))
+(define-public r-annotationfilter
+ (package
+ (name "r-annotationfilter")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationFilter" version))
+ (sha256
+ (base32
+ "0npk0laa2rc93rsh6yikj886zf2fl53a050j07fj9w67j0q0h3s9"))))
+ (properties
+ `((upstream-name . "AnnotationFilter")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicranges" ,r-genomicranges)
+ ("r-lazyeval" ,r-lazyeval)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/Bioconductor/AnnotationFilter")
+ (synopsis "Facilities for filtering Bioconductor annotation resources")
+ (description
+ "This package provides classes and other infrastructure to implement
+filters for manipulating Bioconductor annotation resources. The filters are
+used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.")
+ (license license:artistic2.0)))
+
(define-public r-annotationforge
(package
(name "r-annotationforge")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 24973d3..c144344 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8203,32 +8203,6 @@ package, and for letting R applications work on datasets
that are larger than
the available RAM.")
(license license:artistic2.0)))
-(define-public r-annotationfilter
- (package
- (name "r-annotationfilter")
- (version "1.14.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "AnnotationFilter" version))
- (sha256
- (base32
- "0npk0laa2rc93rsh6yikj886zf2fl53a050j07fj9w67j0q0h3s9"))))
- (properties
- `((upstream-name . "AnnotationFilter")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-genomicranges" ,r-genomicranges)
- ("r-lazyeval" ,r-lazyeval)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://github.com/Bioconductor/AnnotationFilter")
- (synopsis "Facilities for filtering Bioconductor annotation resources")
- (description
- "This package provides classes and other infrastructure to implement
-filters for manipulating Bioconductor annotation resources. The filters are
-used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.")
- (license license:artistic2.0)))
-
(define-public emboss
(package
(name "emboss")
- 31/54: gnu: r-biovizbase: Move to (gnu packages bioconductor)., (continued)
- 31/54: gnu: r-biovizbase: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 36/54: gnu: r-motifrg: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 39/54: gnu: r-rhtslib: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 23/54: gnu: r-keggrest: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 30/54: gnu: r-vsn: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 35/54: gnu: r-sva: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 38/54: gnu: r-zlibbioc: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 41/54: gnu: r-rcas: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 44/54: gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 47/54: gnu: r-chipseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 45/54: gnu: r-annotationfilter: Move to (gnu packages bioconductor).,
guix-commits <=
- 49/54: gnu: r-copywriter: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 50/54: gnu: r-methylkit: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 53/54: gnu: r-spp: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 52/54: gnu: r-geneoverlap: Move out of experiment section., guix-commits, 2021/05/31
- 37/54: gnu: r-seqlogo: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 40/54: gnu: r-bamsignals: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 54/54: gnu: r-chipseeker: Move out of experiment section., guix-commits, 2021/05/31