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34/45: gnu: r-stringdb: Add missing input and disable tests.
From: |
guix-commits |
Subject: |
34/45: gnu: r-stringdb: Add missing input and disable tests. |
Date: |
Wed, 27 Nov 2024 11:07:22 -0500 (EST) |
rekado pushed a commit to branch r-team
in repository guix.
commit bbb6cb993ba5778563447dbe377f6102128387fa
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Nov 27 16:12:44 2024 +0100
gnu: r-stringdb: Add missing input and disable tests.
* gnu/packages/bioconductor.scm (r-stringdb)[arguments]: Disable tests.
[native-inputs]: Add r-biocgenerics.
Change-Id: I534f7102e4397111bba7c58353ba5fc74c8bd2cf
---
gnu/packages/bioconductor.scm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 96c91de376..fdebd91fcd 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13062,6 +13062,8 @@ Biology at
(base32 "118n30lq01xp7irdxffc5hmym7wini8pfsk2xszh8lwf9ii0l5z9"))))
(properties `((upstream-name . "STRINGdb")))
(build-system r-build-system)
+ ;; Tests attempt to connect to string-db.org website.
+ (arguments (list #:tests? #false))
(propagated-inputs
(list r-gplots
r-hash
@@ -13072,7 +13074,7 @@ Biology at
r-png
r-rcolorbrewer
r-sqldf))
- (native-inputs (list r-runit))
+ (native-inputs (list r-biocgenerics r-runit))
(home-page "https://git.bioconductor.org/packages/STRINGdb")
(synopsis "Search tool for the retrieval of interacting proteins database")
(description
- 10/45: gnu: r-hdwgcna: Add missing inputs., (continued)
- 10/45: gnu: r-hdwgcna: Add missing inputs., guix-commits, 2024/11/27
- 21/45: gnu: Add r-hgu95a-db., guix-commits, 2024/11/27
- 14/45: gnu: r-openmx: Add missing input., guix-commits, 2024/11/27
- 15/45: gnu: Add r-earth., guix-commits, 2024/11/27
- 31/45: import/cran: Detect test and vignette inputs., guix-commits, 2024/11/27
- 38/45: gnu: r-chromstar: Add missing input., guix-commits, 2024/11/27
- 09/45: gnu: r-rcmdcheck: Add missing inputs., guix-commits, 2024/11/27
- 25/45: gnu: r-monocle: Disable tests., guix-commits, 2024/11/27
- 23/45: gnu: r-gsva: Add missing input., guix-commits, 2024/11/27
- 29/45: import: utils: Wrap function names in @code., guix-commits, 2024/11/27
- 34/45: gnu: r-stringdb: Add missing input and disable tests.,
guix-commits <=
- 40/45: gnu: r-gqtlbase: Disable tests., guix-commits, 2024/11/27
- 45/45: gnu: r-psmatch: Add missing inputs., guix-commits, 2024/11/27
- 03/45: gnu: r-untb: Add missing inputs and disable vignettes., guix-commits, 2024/11/27
- 12/45: gnu: r-kmer: Add missing input., guix-commits, 2024/11/27
- 08/45: gnu: r-haplo-stats: Fix vignettes., guix-commits, 2024/11/27
- 16/45: gnu: r-parsnip: Add missing input., guix-commits, 2024/11/27
- 22/45: gnu: Add r-gsvadata., guix-commits, 2024/11/27
- 19/45: gnu: r-pando: Add missing inputs and disable tests., guix-commits, 2024/11/27
- 28/45: gnu: r-msexperiment: Add missing inputs., guix-commits, 2024/11/27
- 24/45: gnu: r-doubletcollection: Add missing input and disable tests., guix-commits, 2024/11/27