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19/45: gnu: r-pando: Add missing inputs and disable tests.


From: guix-commits
Subject: 19/45: gnu: r-pando: Add missing inputs and disable tests.
Date: Wed, 27 Nov 2024 11:07:18 -0500 (EST)

rekado pushed a commit to branch r-team
in repository guix.

commit 4035164ff765e1f19341208aa7c55401a91a2d2b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Nov 27 12:00:54 2024 +0100

    gnu: r-pando: Add missing inputs and disable tests.
    
    * gnu/packages/bioinformatics.scm (r-pando)[native-inputs]: Add
    r-bsgenome-hsapiens-ucsc-hg38, r-devtools, r-doparallel, and
    r-ensdb-hsapiens-v86.
    [arguments]: Disable tests.
    
    Change-Id: Ic66679e2b8c4cdb9835ce08dc4dbb0a42e35e291
---
 gnu/packages/bioinformatics.scm | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8e9b130e7b..bcf5fc2a12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12389,6 +12389,8 @@ differently labelled data.")
     (build-system r-build-system)
     (arguments
      (list
+      ;; The test file data/test_seurat.rds is not included.
+      #:tests? #false
       #:phases
       '(modify-phases %standard-phases
          (add-after 'unpack 'loosen-requirements
@@ -12418,7 +12420,12 @@ differently labelled data.")
            r-tidygraph
            r-tidyverse
            r-uwot))
-    (native-inputs (list r-knitr))
+    (native-inputs
+     (list r-bsgenome-hsapiens-ucsc-hg38
+           r-devtools
+           r-doparallel
+           r-ensdb-hsapiens-v86
+           r-knitr))
     (home-page "https://github.com/quadbiolab/Pando";)
     (synopsis "Infer regulomes from multi-modal single-cell genomics data")
     (description



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