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19/45: gnu: r-pando: Add missing inputs and disable tests.
From: |
guix-commits |
Subject: |
19/45: gnu: r-pando: Add missing inputs and disable tests. |
Date: |
Wed, 27 Nov 2024 11:07:18 -0500 (EST) |
rekado pushed a commit to branch r-team
in repository guix.
commit 4035164ff765e1f19341208aa7c55401a91a2d2b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Nov 27 12:00:54 2024 +0100
gnu: r-pando: Add missing inputs and disable tests.
* gnu/packages/bioinformatics.scm (r-pando)[native-inputs]: Add
r-bsgenome-hsapiens-ucsc-hg38, r-devtools, r-doparallel, and
r-ensdb-hsapiens-v86.
[arguments]: Disable tests.
Change-Id: Ic66679e2b8c4cdb9835ce08dc4dbb0a42e35e291
---
gnu/packages/bioinformatics.scm | 9 ++++++++-
1 file changed, 8 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8e9b130e7b..bcf5fc2a12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12389,6 +12389,8 @@ differently labelled data.")
(build-system r-build-system)
(arguments
(list
+ ;; The test file data/test_seurat.rds is not included.
+ #:tests? #false
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'loosen-requirements
@@ -12418,7 +12420,12 @@ differently labelled data.")
r-tidygraph
r-tidyverse
r-uwot))
- (native-inputs (list r-knitr))
+ (native-inputs
+ (list r-bsgenome-hsapiens-ucsc-hg38
+ r-devtools
+ r-doparallel
+ r-ensdb-hsapiens-v86
+ r-knitr))
(home-page "https://github.com/quadbiolab/Pando";)
(synopsis "Infer regulomes from multi-modal single-cell genomics data")
(description
- 23/45: gnu: r-gsva: Add missing input., (continued)
- 23/45: gnu: r-gsva: Add missing input., guix-commits, 2024/11/27
- 29/45: import: utils: Wrap function names in @code., guix-commits, 2024/11/27
- 34/45: gnu: r-stringdb: Add missing input and disable tests., guix-commits, 2024/11/27
- 40/45: gnu: r-gqtlbase: Disable tests., guix-commits, 2024/11/27
- 45/45: gnu: r-psmatch: Add missing inputs., guix-commits, 2024/11/27
- 03/45: gnu: r-untb: Add missing inputs and disable vignettes., guix-commits, 2024/11/27
- 12/45: gnu: r-kmer: Add missing input., guix-commits, 2024/11/27
- 08/45: gnu: r-haplo-stats: Fix vignettes., guix-commits, 2024/11/27
- 16/45: gnu: r-parsnip: Add missing input., guix-commits, 2024/11/27
- 22/45: gnu: Add r-gsvadata., guix-commits, 2024/11/27
- 19/45: gnu: r-pando: Add missing inputs and disable tests.,
guix-commits <=
- 28/45: gnu: r-msexperiment: Add missing inputs., guix-commits, 2024/11/27
- 24/45: gnu: r-doubletcollection: Add missing input and disable tests., guix-commits, 2024/11/27
- 30/45: import/cran: Set HOME when R.rsp is among inputs., guix-commits, 2024/11/27
- 33/45: gnu: r-category: Add missing inputs., guix-commits, 2024/11/27
- 37/45: gnu: r-gtrack: Add missing input., guix-commits, 2024/11/27
- 39/45: gnu: r-monocle3: Update to 1.3.7., guix-commits, 2024/11/27
- 36/45: gnu: r-biocpkgtools: Disable tests., guix-commits, 2024/11/27
- 44/45: gnu: r-riboprofiling: Add missing input., guix-commits, 2024/11/27
- 11/45: gnu: r-devtools: Add missing input., guix-commits, 2024/11/27
- 13/45: gnu: Add r-plotmo., guix-commits, 2024/11/27