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[igraph] troubles building igraph-0.6.5 ubuntu 64bit
From: |
Kent Mein |
Subject: |
[igraph] troubles building igraph-0.6.5 ubuntu 64bit |
Date: |
Tue, 11 Feb 2014 03:14:44 -0600 |
User-agent: |
Mutt/1.5.21 (2010-09-15) |
Hi I'm trying to install igraph-0.6.5 on an ubuntu 12.04 64bit box.
./configure works just fine, but durring the final link stage I'm
getting the following error. Any tips on how to fix this?
Thanks,
Kent Mein
[3:06] address@hidden % make
make all-recursive
make[1]: Entering directory `/home/staff01/mein/Downloads/igraph-0.6.5'
Making all in src
make[2]: Entering directory `/home/staff01/mein/Downloads/igraph-0.6.5/src'
make all-am
make[3]: Entering directory `/home/staff01/mein/Downloads/igraph-0.6.5/src'
/bin/bash ../libtool --tag=CXX --mode=link g++ -I../include -I../include
-Wall -I../optional/glpk -g -O2 -no-undefined -lgmp -o libigraph.la -rpath
/soft/python-2.7/ubuntuamd1/lib libigraph_la-basic_query.lo
libigraph_la-games.lo libigraph_la-cocitation.lo libigraph_la-iterators.lo
libigraph_la-structural_properties.lo libigraph_la-components.lo
libigraph_la-layout.lo libigraph_la-structure_generators.lo
libigraph_la-conversion.lo libigraph_la-type_indexededgelist.lo
libigraph_la-spanning_trees.lo libigraph_la-igraph_error.lo
libigraph_la-interrupt.lo libigraph_la-other.lo libigraph_la-foreign.lo
libigraph_la-random.lo libigraph_la-attributes.lo
libigraph_la-foreign-ncol-parser.lo libigraph_la-foreign-ncol-lexer.lo
libigraph_la-foreign-lgl-parser.lo libigraph_la-foreign-lgl-lexer.lo
libigraph_la-foreign-pajek-parser.lo libigraph_la-foreign-pajek-lexer.lo
libigraph_la-foreign-gml-parser.lo libigraph_la-foreign-gml-lexer.lo
libigraph_la-dqueue.lo libigraph_la-heap.lo libigraph_la-igraph_heap.lo
libigraph_la-igraph_stack.lo libigraph_la-igraph_strvector.lo
libigraph_la-igraph_trie.lo libigraph_la-matrix.lo libigraph_la-vector.lo
libigraph_la-vector_ptr.lo libigraph_la-memory.lo libigraph_la-adjlist.lo
libigraph_la-visitors.lo libigraph_la-igraph_grid.lo libigraph_la-atlas.lo
libigraph_la-topology.lo libigraph_la-motifs.lo libigraph_la-progress.lo
libigraph_la-operators.lo libigraph_la-igraph_psumtree.lo libigraph_la-array.lo
libigraph_la-igraph_hashtable.lo libigraph_la-foreign-graphml.lo
libigraph_la-flow.lo libigraph_la-igraph_buckets.lo
libigraph_la-NetDataTypes.lo libigraph_la-NetRoutines.lo
libigraph_la-clustertool.lo libigraph_la-pottsmodel_2.lo
libigraph_la-spectral_properties.lo libigraph_la-cores.lo
libigraph_la-igraph_set.lo libigraph_la-cliques.lo libigraph_la-revolver_cit.lo
libigraph_la-revolver_grow.lo libigraph_la-walktrap.lo
libigraph_la-walktrap_heap.lo libigraph_la-walktrap_graph.lo
libigraph_la-walktrap_communities.lo libigraph_la-infomap.lo
libigraph_la-infomap_Greedy.lo libigraph_la-infomap_Node.lo
libigraph_la-infomap_FlowGraph.lo libigraph_la-spmatrix.lo
libigraph_la-community.lo libigraph_la-fast_community.lo
libigraph_la-evolver_cit.lo libigraph_la-gml_tree.lo
libigraph_la-bliss_orbit.lo libigraph_la-bliss_eqrefhash.lo
libigraph_la-bliss_partition.lo libigraph_la-bliss_graph.lo
libigraph_la-bliss_timer.lo libigraph_la-bliss_heap.lo
libigraph_la-bliss_utils.lo libigraph_la-bliss.lo libigraph_la-cattributes.lo
libigraph_la-revolver_ml_cit.lo libigraph_la-zeroin.lo libigraph_la-bfgs.lo
libigraph_la-math.lo libigraph_la-forestfire.lo
libigraph_la-microscopic_update.lo libigraph_la-blas.lo libigraph_la-arpack.lo
libigraph_la-centrality.lo libigraph_la-drl_layout.lo libigraph_la-drl_parse.lo
libigraph_la-drl_graph.lo libigraph_la-DensityGrid.lo
libigraph_la-gengraph_box_list.lo libigraph_la-gengraph_degree_sequence.lo
libigraph_la-gengraph_graph_molloy_hash.lo
libigraph_la-gengraph_graph_molloy_optimized.lo
libigraph_la-gengraph_mr-connected.lo libigraph_la-gengraph_powerlaw.lo
libigraph_la-gengraph_random.lo libigraph_la-decomposition.lo
libigraph_la-bipartite.lo libigraph_la-drl_layout_3d.lo
libigraph_la-drl_graph_3d.lo libigraph_la-DensityGrid_3d.lo
libigraph_la-foreign-dl-parser.lo libigraph_la-foreign-dl-lexer.lo
libigraph_la-cs_add.lo libigraph_la-cs_happly.lo libigraph_la-cs_pvec.lo
libigraph_la-cs_amd.lo libigraph_la-cs_house.lo libigraph_la-cs_qr.lo
libigraph_la-cs_chol.lo libigraph_la-cs_ipvec.lo libigraph_la-cs_qrsol.lo
libigraph_la-cs_cholsol.lo libigraph_la-cs_leaf.lo libigraph_la-cs_randperm.lo
libigraph_la-cs_compress.lo libigraph_la-cs_load.lo libigraph_la-cs_reach.lo
libigraph_la-cs_counts.lo libigraph_la-cs_lsolve.lo libigraph_la-cs_scatter.lo
libigraph_la-cs_cumsum.lo libigraph_la-cs_ltsolve.lo libigraph_la-cs_scc.lo
libigraph_la-cs_dfs.lo libigraph_la-cs_lu.lo libigraph_la-cs_schol.lo
libigraph_la-cs_dmperm.lo libigraph_la-cs_lusol.lo libigraph_la-cs_spsolve.lo
libigraph_la-cs_droptol.lo libigraph_la-cs_malloc.lo libigraph_la-cs_sqr.lo
libigraph_la-cs_dropzeros.lo libigraph_la-cs_maxtrans.lo
libigraph_la-cs_symperm.lo libigraph_la-cs_dupl.lo libigraph_la-cs_multiply.lo
libigraph_la-cs_tdfs.lo libigraph_la-cs_entry.lo libigraph_la-cs_norm.lo
libigraph_la-cs_transpose.lo libigraph_la-cs_ereach.lo
libigraph_la-cs_permute.lo libigraph_la-cs_updown.lo libigraph_la-cs_etree.lo
libigraph_la-cs_pinv.lo libigraph_la-cs_usolve.lo libigraph_la-cs_fkeep.lo
libigraph_la-cs_post.lo libigraph_la-cs_util.lo libigraph_la-cs_gaxpy.lo
libigraph_la-cs_print.lo libigraph_la-cs_utsolve.lo libigraph_la-sparsemat.lo
libigraph_la-mixing.lo libigraph_la-bigint.lo libigraph_la-bignum.lo
libigraph_la-version.lo libigraph_la-optimal_modularity.lo
libigraph_la-igraph_fixed_vectorlist.lo libigraph_la-separators.lo
libigraph_la-igraph_marked_queue.lo libigraph_la-igraph_estack.lo
libigraph_la-st-cuts.lo libigraph_la-cohesive_blocks.lo
libigraph_la-statusbar.lo libigraph_la-lapack.lo libigraph_la-complex.lo
libigraph_la-eigen.lo libigraph_la-feedback_arc_set.lo libigraph_la-sugiyama.lo
libigraph_la-glpk_support.lo libigraph_la-igraph_hrg_types.lo
libigraph_la-igraph_hrg.lo libigraph_la-distances.lo
libigraph_la-fortran_intrinsics.lo libigraph_la-matching.lo libigraph_la-scg.lo
libigraph_la-scg_approximate_methods.lo libigraph_la-scg_exact_scg.lo
libigraph_la-scg_kmeans.lo libigraph_la-scg_utils.lo
libigraph_la-scg_optimal_method.lo libigraph_la-qsort.lo
libigraph_la-qsort_r.lo libigraph_la-types.lo libigraph_la-hacks.lo -lm
-L/soft/python-2.7/ubuntuamd1/lib -Wl,-rpath
-WL,/soft/python-2.7/ubuntuamd1/lib -lxml2 -lz -lm libf2c.la libblas.la
liblapack.la libdlamch.la libarpack.la libglpk.la libplfit.la
libtool: link: g++ -fPIC -DPIC -shared -nostdlib
/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o
/usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o .libs/libigraph_la-basic_query.o
.libs/libigraph_la-games.o .libs/libigraph_la-cocitation.o
.libs/libigraph_la-iterators.o .libs/libigraph_la-structural_properties.o
.libs/libigraph_la-components.o .libs/libigraph_la-layout.o
.libs/libigraph_la-structure_generators.o .libs/libigraph_la-conversion.o
.libs/libigraph_la-type_indexededgelist.o .libs/libigraph_la-spanning_trees.o
.libs/libigraph_la-igraph_error.o .libs/libigraph_la-interrupt.o
.libs/libigraph_la-other.o .libs/libigraph_la-foreign.o
.libs/libigraph_la-random.o .libs/libigraph_la-attributes.o
.libs/libigraph_la-foreign-ncol-parser.o
.libs/libigraph_la-foreign-ncol-lexer.o .libs/libigraph_la-foreign-lgl-parser.o
.libs/libigraph_la-foreign-lgl-lexer.o
.libs/libigraph_la-foreign-pajek-parser.o
.libs/libigraph_la-foreign-pajek-lexer.o
.libs/libigraph_la-foreign-gml-parser.o .libs/libigraph_la-foreign-gml-lexer.o
.libs/libigraph_la-dqueue.o .libs/libigraph_la-heap.o
.libs/libigraph_la-igraph_heap.o .libs/libigraph_la-igraph_stack.o
.libs/libigraph_la-igraph_strvector.o .libs/libigraph_la-igraph_trie.o
.libs/libigraph_la-matrix.o .libs/libigraph_la-vector.o
.libs/libigraph_la-vector_ptr.o .libs/libigraph_la-memory.o
.libs/libigraph_la-adjlist.o .libs/libigraph_la-visitors.o
.libs/libigraph_la-igraph_grid.o .libs/libigraph_la-atlas.o
.libs/libigraph_la-topology.o .libs/libigraph_la-motifs.o
.libs/libigraph_la-progress.o .libs/libigraph_la-operators.o
.libs/libigraph_la-igraph_psumtree.o .libs/libigraph_la-array.o
.libs/libigraph_la-igraph_hashtable.o .libs/libigraph_la-foreign-graphml.o
.libs/libigraph_la-flow.o .libs/libigraph_la-igraph_buckets.o
.libs/libigraph_la-NetDataTypes.o .libs/libigraph_la-NetRoutines.o
.libs/libigraph_la-clustertool.o .libs/libigraph_la-pottsmodel_2.o
.libs/libigraph_la-spectral_properties.o .libs/libigraph_la-cores.o
.libs/libigraph_la-igraph_set.o .libs/libigraph_la-cliques.o
.libs/libigraph_la-revolver_cit.o .libs/libigraph_la-revolver_grow.o
.libs/libigraph_la-walktrap.o .libs/libigraph_la-walktrap_heap.o
.libs/libigraph_la-walktrap_graph.o .libs/libigraph_la-walktrap_communities.o
.libs/libigraph_la-infomap.o .libs/libigraph_la-infomap_Greedy.o
.libs/libigraph_la-infomap_Node.o .libs/libigraph_la-infomap_FlowGraph.o
.libs/libigraph_la-spmatrix.o .libs/libigraph_la-community.o
.libs/libigraph_la-fast_community.o .libs/libigraph_la-evolver_cit.o
.libs/libigraph_la-gml_tree.o .libs/libigraph_la-bliss_orbit.o
.libs/libigraph_la-bliss_eqrefhash.o .libs/libigraph_la-bliss_partition.o
.libs/libigraph_la-bliss_graph.o .libs/libigraph_la-bliss_timer.o
.libs/libigraph_la-bliss_heap.o .libs/libigraph_la-bliss_utils.o
.libs/libigraph_la-bliss.o .libs/libigraph_la-cattributes.o
.libs/libigraph_la-revolver_ml_cit.o .libs/libigraph_la-zeroin.o
.libs/libigraph_la-bfgs.o .libs/libigraph_la-math.o
.libs/libigraph_la-forestfire.o .libs/libigraph_la-microscopic_update.o
.libs/libigraph_la-blas.o .libs/libigraph_la-arpack.o
.libs/libigraph_la-centrality.o .libs/libigraph_la-drl_layout.o
.libs/libigraph_la-drl_parse.o .libs/libigraph_la-drl_graph.o
.libs/libigraph_la-DensityGrid.o .libs/libigraph_la-gengraph_box_list.o
.libs/libigraph_la-gengraph_degree_sequence.o
.libs/libigraph_la-gengraph_graph_molloy_hash.o
.libs/libigraph_la-gengraph_graph_molloy_optimized.o
.libs/libigraph_la-gengraph_mr-connected.o
.libs/libigraph_la-gengraph_powerlaw.o .libs/libigraph_la-gengraph_random.o
.libs/libigraph_la-decomposition.o .libs/libigraph_la-bipartite.o
.libs/libigraph_la-drl_layout_3d.o .libs/libigraph_la-drl_graph_3d.o
.libs/libigraph_la-DensityGrid_3d.o .libs/libigraph_la-foreign-dl-parser.o
.libs/libigraph_la-foreign-dl-lexer.o .libs/libigraph_la-cs_add.o
.libs/libigraph_la-cs_happly.o .libs/libigraph_la-cs_pvec.o
.libs/libigraph_la-cs_amd.o .libs/libigraph_la-cs_house.o
.libs/libigraph_la-cs_qr.o .libs/libigraph_la-cs_chol.o
.libs/libigraph_la-cs_ipvec.o .libs/libigraph_la-cs_qrsol.o
.libs/libigraph_la-cs_cholsol.o .libs/libigraph_la-cs_leaf.o
.libs/libigraph_la-cs_randperm.o .libs/libigraph_la-cs_compress.o
.libs/libigraph_la-cs_load.o .libs/libigraph_la-cs_reach.o
.libs/libigraph_la-cs_counts.o .libs/libigraph_la-cs_lsolve.o
.libs/libigraph_la-cs_scatter.o .libs/libigraph_la-cs_cumsum.o
.libs/libigraph_la-cs_ltsolve.o .libs/libigraph_la-cs_scc.o
.libs/libigraph_la-cs_dfs.o .libs/libigraph_la-cs_lu.o
.libs/libigraph_la-cs_schol.o .libs/libigraph_la-cs_dmperm.o
.libs/libigraph_la-cs_lusol.o .libs/libigraph_la-cs_spsolve.o
.libs/libigraph_la-cs_droptol.o .libs/libigraph_la-cs_malloc.o
.libs/libigraph_la-cs_sqr.o .libs/libigraph_la-cs_dropzeros.o
.libs/libigraph_la-cs_maxtrans.o .libs/libigraph_la-cs_symperm.o
.libs/libigraph_la-cs_dupl.o .libs/libigraph_la-cs_multiply.o
.libs/libigraph_la-cs_tdfs.o .libs/libigraph_la-cs_entry.o
.libs/libigraph_la-cs_norm.o .libs/libigraph_la-cs_transpose.o
.libs/libigraph_la-cs_ereach.o .libs/libigraph_la-cs_permute.o
.libs/libigraph_la-cs_updown.o .libs/libigraph_la-cs_etree.o
.libs/libigraph_la-cs_pinv.o .libs/libigraph_la-cs_usolve.o
.libs/libigraph_la-cs_fkeep.o .libs/libigraph_la-cs_post.o
.libs/libigraph_la-cs_util.o .libs/libigraph_la-cs_gaxpy.o
.libs/libigraph_la-cs_print.o .libs/libigraph_la-cs_utsolve.o
.libs/libigraph_la-sparsemat.o .libs/libigraph_la-mixing.o
.libs/libigraph_la-bigint.o .libs/libigraph_la-bignum.o
.libs/libigraph_la-version.o .libs/libigraph_la-optimal_modularity.o
.libs/libigraph_la-igraph_fixed_vectorlist.o .libs/libigraph_la-separators.o
.libs/libigraph_la-igraph_marked_queue.o .libs/libigraph_la-igraph_estack.o
.libs/libigraph_la-st-cuts.o .libs/libigraph_la-cohesive_blocks.o
.libs/libigraph_la-statusbar.o .libs/libigraph_la-lapack.o
.libs/libigraph_la-complex.o .libs/libigraph_la-eigen.o
.libs/libigraph_la-feedback_arc_set.o .libs/libigraph_la-sugiyama.o
.libs/libigraph_la-glpk_support.o .libs/libigraph_la-igraph_hrg_types.o
.libs/libigraph_la-igraph_hrg.o .libs/libigraph_la-distances.o
.libs/libigraph_la-fortran_intrinsics.o .libs/libigraph_la-matching.o
.libs/libigraph_la-scg.o .libs/libigraph_la-scg_approximate_methods.o
.libs/libigraph_la-scg_exact_scg.o .libs/libigraph_la-scg_kmeans.o
.libs/libigraph_la-scg_utils.o .libs/libigraph_la-scg_optimal_method.o
.libs/libigraph_la-qsort.o .libs/libigraph_la-qsort_r.o
.libs/libigraph_la-types.o .libs/libigraph_la-hacks.o -Wl,--whole-archive
./.libs/libf2c.a ./.libs/libblas.a ./.libs/liblapack.a ./.libs/libdlamch.a
./.libs/libarpack.a ./.libs/libglpk.a ./.libs/libplfit.a -Wl,--no-whole-archive
-Wl,-rpath -Wl,/soft/python-2.7/ubuntuamd1/lib -Wl,-rpath
-Wl,/soft/python-2.7/ubuntuamd1/lib -L/soft/python-2.7/ubuntuamd1/lib
/soft/python-2.7/ubuntuamd1/lib/libxml2.so -lz -lgmp
-L/usr/lib/gcc/x86_64-linux-gnu/4.6
-L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu
-L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu
-L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s
/usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o
/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -O2
-Wl,-rpath -Wl,-soname -Wl,libigraph.so.0 -o .libs/libigraph.so.0.0.0
/usr/bin/ld: cannot find libigraph.so.0: No such file or directory
collect2: ld returned 1 exit status
make[3]: *** [libigraph.la] Error 1
make[3]: Leaving directory `/home/staff01/mein/Downloads/igraph-0.6.5/src'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/home/staff01/mein/Downloads/igraph-0.6.5/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/staff01/mein/Downloads/igraph-0.6.5'
make: *** [all] Error 2
--
address@hidden
http://www.cs.umn.edu/~mein
- [igraph] troubles building igraph-0.6.5 ubuntu 64bit,
Kent Mein <=