Re: [igraph] troubles building igraph-0.6.5 ubuntu 64bit

[Tamás Nepusz]

Hi,

igraph should compile just fine on Ubuntu 12.04. Did you pass any special 
arguments to ./configure or make, or is there anything unusual about this 
system that might affect the compilation process? 

-- 
T.


On Tuesday, 11 February 2014 at 10:14, Kent Mein wrote:

> Hi I'm trying to install igraph-0.6.5 on an ubuntu 12.04 64bit box.
> 
> ./configure works just fine, but durring the final link stage I'm
> getting the following error. Any tips on how to fix this?
> 
> Thanks,
> 
> Kent Mein
> 
> [3:06] address@hidden % make
> make all-recursive
> make[1]: Entering directory `/home/staff01/mein/Downloads/igraph-0.6.5'
> Making all in src
> make[2]: Entering directory `/home/staff01/mein/Downloads/igraph-0.6.5/src'
> make all-am
> make[3]: Entering directory `/home/staff01/mein/Downloads/igraph-0.6.5/src'
> /bin/bash ../libtool --tag=CXX --mode=link g++ -I../include -I../include 
> -Wall -I../optional/glpk -g -O2 -no-undefined -lgmp -o libigraph.la 
> (http://libigraph.la) -rpath /soft/python-2.7/ubuntuamd1/lib 
> libigraph_la-basic_query.lo libigraph_la-games.lo libigraph_la-cocitation.lo 
> libigraph_la-iterators.lo libigraph_la-structural_properties.lo 
> libigraph_la-components.lo libigraph_la-layout.lo 
> libigraph_la-structure_generators.lo libigraph_la-conversion.lo 
> libigraph_la-type_indexededgelist.lo libigraph_la-spanning_trees.lo 
> libigraph_la-igraph_error.lo libigraph_la-interrupt.lo libigraph_la-other.lo 
> libigraph_la-foreign.lo libigraph_la-random.lo libigraph_la-attributes.lo 
> libigraph_la-foreign-ncol-parser.lo libigraph_la-foreign-ncol-lexer.lo 
> libigraph_la-foreign-lgl-parser.lo libigraph_la-foreign-lgl-lexer.lo 
> libigraph_la-foreign-pajek-parser.lo libigraph_la-foreign-pajek-lexer.lo 
> libigraph_la-foreign-gml-parser.lo libigraph_la-foreign-gml-lexer.lo 
> libigraph_la-dqueue.lo libigraph_la-he
ap.lo libigrap
> h_la-igraph_heap.lo libigraph_la-igraph_stack.lo 
> libigraph_la-igraph_strvector.lo libigraph_la-igraph_trie.lo 
> libigraph_la-matrix.lo libigraph_la-vector.lo libigraph_la-vector_ptr.lo 
> libigraph_la-memory.lo libigraph_la-adjlist.lo libigraph_la-visitors.lo 
> libigraph_la-igraph_grid.lo libigraph_la-atlas.lo libigraph_la-topology.lo 
> libigraph_la-motifs.lo libigraph_la-progress.lo libigraph_la-operators.lo 
> libigraph_la-igraph_psumtree.lo libigraph_la-array.lo 
> libigraph_la-igraph_hashtable.lo libigraph_la-foreign-graphml.lo 
> libigraph_la-flow.lo libigraph_la-igraph_buckets.lo 
> libigraph_la-NetDataTypes.lo libigraph_la-NetRoutines.lo 
> libigraph_la-clustertool.lo libigraph_la-pottsmodel_2.lo 
> libigraph_la-spectral_properties.lo libigraph_la-cores.lo 
> libigraph_la-igraph_set.lo libigraph_la-cliques.lo 
> libigraph_la-revolver_cit.lo libigraph_la-revolver_grow.lo 
> libigraph_la-walktrap.lo libigraph_la-walktrap_heap.lo 
> libigraph_la-walktrap_graph.lo libigraph_la-walktrap_communities.lo libigraph
> _la-infomap.lo libigraph_la-infomap_Greedy.lo libigraph_la-infomap_Node.lo 
> libigraph_la-infomap_FlowGraph.lo libigraph_la-spmatrix.lo 
> libigraph_la-community.lo libigraph_la-fast_community.lo 
> libigraph_la-evolver_cit.lo libigraph_la-gml_tree.lo 
> libigraph_la-bliss_orbit.lo libigraph_la-bliss_eqrefhash.lo 
> libigraph_la-bliss_partition.lo libigraph_la-bliss_graph.lo 
> libigraph_la-bliss_timer.lo libigraph_la-bliss_heap.lo 
> libigraph_la-bliss_utils.lo libigraph_la-bliss.lo libigraph_la-cattributes.lo 
> libigraph_la-revolver_ml_cit.lo libigraph_la-zeroin.lo libigraph_la-bfgs.lo 
> libigraph_la-math.lo libigraph_la-forestfire.lo 
> libigraph_la-microscopic_update.lo libigraph_la-blas.lo 
> libigraph_la-arpack.lo libigraph_la-centrality.lo libigraph_la-drl_layout.lo 
> libigraph_la-drl_parse.lo libigraph_la-drl_graph.lo 
> libigraph_la-DensityGrid.lo libigraph_la-gengraph_box_list.lo 
> libigraph_la-gengraph_degree_sequence.lo 
> libigraph_la-gengraph_graph_molloy_hash.lo 
> libigraph_la-gengraph_graph_molloy_op
> timized.lo libigraph_la-gengraph_mr-connected.lo 
> libigraph_la-gengraph_powerlaw.lo libigraph_la-gengraph_random.lo 
> libigraph_la-decomposition.lo libigraph_la-bipartite.lo 
> libigraph_la-drl_layout_3d.lo libigraph_la-drl_graph_3d.lo 
> libigraph_la-DensityGrid_3d.lo libigraph_la-foreign-dl-parser.lo 
> libigraph_la-foreign-dl-lexer.lo libigraph_la-cs_add.lo 
> libigraph_la-cs_happly.lo libigraph_la-cs_pvec.lo libigraph_la-cs_amd.lo 
> libigraph_la-cs_house.lo libigraph_la-cs_qr.lo libigraph_la-cs_chol.lo 
> libigraph_la-cs_ipvec.lo libigraph_la-cs_qrsol.lo libigraph_la-cs_cholsol.lo 
> libigraph_la-cs_leaf.lo libigraph_la-cs_randperm.lo 
> libigraph_la-cs_compress.lo libigraph_la-cs_load.lo libigraph_la-cs_reach.lo 
> libigraph_la-cs_counts.lo libigraph_la-cs_lsolve.lo 
> libigraph_la-cs_scatter.lo libigraph_la-cs_cumsum.lo 
> libigraph_la-cs_ltsolve.lo libigraph_la-cs_scc.lo libigraph_la-cs_dfs.lo 
> libigraph_la-cs_lu.lo libigraph_la-cs_schol.lo libigraph_la-cs_dmperm.lo 
> libigraph_la-cs_lusol.lo libigraph_la
> -cs_spsolve.lo libigraph_la-cs_droptol.lo libigraph_la-cs_malloc.lo 
> libigraph_la-cs_sqr.lo libigraph_la-cs_dropzeros.lo 
> libigraph_la-cs_maxtrans.lo libigraph_la-cs_symperm.lo 
> libigraph_la-cs_dupl.lo libigraph_la-cs_multiply.lo libigraph_la-cs_tdfs.lo 
> libigraph_la-cs_entry.lo libigraph_la-cs_norm.lo libigraph_la-cs_transpose.lo 
> libigraph_la-cs_ereach.lo libigraph_la-cs_permute.lo 
> libigraph_la-cs_updown.lo libigraph_la-cs_etree.lo libigraph_la-cs_pinv.lo 
> libigraph_la-cs_usolve.lo libigraph_la-cs_fkeep.lo libigraph_la-cs_post.lo 
> libigraph_la-cs_util.lo libigraph_la-cs_gaxpy.lo libigraph_la-cs_print.lo 
> libigraph_la-cs_utsolve.lo libigraph_la-sparsemat.lo libigraph_la-mixing.lo 
> libigraph_la-bigint.lo libigraph_la-bignum.lo libigraph_la-version.lo 
> libigraph_la-optimal_modularity.lo libigraph_la-igraph_fixed_vectorlist.lo 
> libigraph_la-separators.lo libigraph_la-igraph_marked_queue.lo 
> libigraph_la-igraph_estack.lo libigraph_la-st-cuts.lo 
> libigraph_la-cohesive_blocks.lo libigraph_la-
> statusbar.lo libigraph_la-lapack.lo libigraph_la-complex.lo 
> libigraph_la-eigen.lo libigraph_la-feedback_arc_set.lo 
> libigraph_la-sugiyama.lo libigraph_la-glpk_support.lo 
> libigraph_la-igraph_hrg_types.lo libigraph_la-igraph_hrg.lo 
> libigraph_la-distances.lo libigraph_la-fortran_intrinsics.lo 
> libigraph_la-matching.lo libigraph_la-scg.lo 
> libigraph_la-scg_approximate_methods.lo libigraph_la-scg_exact_scg.lo 
> libigraph_la-scg_kmeans.lo libigraph_la-scg_utils.lo 
> libigraph_la-scg_optimal_method.lo libigraph_la-qsort.lo 
> libigraph_la-qsort_r.lo libigraph_la-types.lo libigraph_la-hacks.lo -lm 
> -L/soft/python-2.7/ubuntuamd1/lib -Wl,-rpath 
> -WL,/soft/python-2.7/ubuntuamd1/lib -lxml2 -lz -lm libf2c.la 
> (http://libf2c.la) libblas.la (http://libblas.la) liblapack.la 
> (http://liblapack.la) libdlamch.la (http://libdlamch.la) libarpack.la 
> (http://libarpack.la) libglpk.la (http://libglpk.la) libplfit.la 
> (http://libplfit.la) 
> libtool: link: g++ -fPIC -DPIC -shared -nostdlib 
> /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o 
> /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o 
> .libs/libigraph_la-basic_query.o .libs/libigraph_la-games.o 
> .libs/libigraph_la-cocitation.o .libs/libigraph_la-iterators.o 
> .libs/libigraph_la-structural_properties.o .libs/libigraph_la-components.o 
> .libs/libigraph_la-layout.o .libs/libigraph_la-structure_generators.o 
> .libs/libigraph_la-conversion.o .libs/libigraph_la-type_indexededgelist.o 
> .libs/libigraph_la-spanning_trees.o .libs/libigraph_la-igraph_error.o 
> .libs/libigraph_la-interrupt.o .libs/libigraph_la-other.o 
> .libs/libigraph_la-foreign.o .libs/libigraph_la-random.o 
> .libs/libigraph_la-attributes.o .libs/libigraph_la-foreign-ncol-parser.o 
> .libs/libigraph_la-foreign-ncol-lexer.o 
> .libs/libigraph_la-foreign-lgl-parser.o 
> .libs/libigraph_la-foreign-lgl-lexer.o 
> .libs/libigraph_la-foreign-pajek-parser.o 
> .libs/libigraph_la-foreign-pajek-lexer.o .libs/libigraph_la-forei
> gn-gml-parser.o .libs/libigraph_la-foreign-gml-lexer.o 
> .libs/libigraph_la-dqueue.o .libs/libigraph_la-heap.o 
> .libs/libigraph_la-igraph_heap.o .libs/libigraph_la-igraph_stack.o 
> .libs/libigraph_la-igraph_strvector.o .libs/libigraph_la-igraph_trie.o 
> .libs/libigraph_la-matrix.o .libs/libigraph_la-vector.o 
> .libs/libigraph_la-vector_ptr.o .libs/libigraph_la-memory.o 
> .libs/libigraph_la-adjlist.o .libs/libigraph_la-visitors.o 
> .libs/libigraph_la-igraph_grid.o .libs/libigraph_la-atlas.o 
> .libs/libigraph_la-topology.o .libs/libigraph_la-motifs.o 
> .libs/libigraph_la-progress.o .libs/libigraph_la-operators.o 
> .libs/libigraph_la-igraph_psumtree.o .libs/libigraph_la-array.o 
> .libs/libigraph_la-igraph_hashtable.o .libs/libigraph_la-foreign-graphml.o 
> .libs/libigraph_la-flow.o .libs/libigraph_la-igraph_buckets.o 
> .libs/libigraph_la-NetDataTypes.o .libs/libigraph_la-NetRoutines.o 
> .libs/libigraph_la-clustertool.o .libs/libigraph_la-pottsmodel_2.o 
> .libs/libigraph_la-spectral_properties.o .libs/libigr
> aph_la-cores.o .libs/libigraph_la-igraph_set.o .libs/libigraph_la-cliques.o 
> .libs/libigraph_la-revolver_cit.o .libs/libigraph_la-revolver_grow.o 
> .libs/libigraph_la-walktrap.o .libs/libigraph_la-walktrap_heap.o 
> .libs/libigraph_la-walktrap_graph.o .libs/libigraph_la-walktrap_communities.o 
> .libs/libigraph_la-infomap.o .libs/libigraph_la-infomap_Greedy.o 
> .libs/libigraph_la-infomap_Node.o .libs/libigraph_la-infomap_FlowGraph.o 
> .libs/libigraph_la-spmatrix.o .libs/libigraph_la-community.o 
> .libs/libigraph_la-fast_community.o .libs/libigraph_la-evolver_cit.o 
> .libs/libigraph_la-gml_tree.o .libs/libigraph_la-bliss_orbit.o 
> .libs/libigraph_la-bliss_eqrefhash.o .libs/libigraph_la-bliss_partition.o 
> .libs/libigraph_la-bliss_graph.o .libs/libigraph_la-bliss_timer.o 
> .libs/libigraph_la-bliss_heap.o .libs/libigraph_la-bliss_utils.o 
> .libs/libigraph_la-bliss.o .libs/libigraph_la-cattributes.o 
> .libs/libigraph_la-revolver_ml_cit.o .libs/libigraph_la-zeroin.o 
> .libs/libigraph_la-bfgs.o .libs/libigrap
> h_la-math.o .libs/libigraph_la-forestfire.o 
> .libs/libigraph_la-microscopic_update.o .libs/libigraph_la-blas.o 
> .libs/libigraph_la-arpack.o .libs/libigraph_la-centrality.o 
> .libs/libigraph_la-drl_layout.o .libs/libigraph_la-drl_parse.o 
> .libs/libigraph_la-drl_graph.o .libs/libigraph_la-DensityGrid.o 
> .libs/libigraph_la-gengraph_box_list.o 
> .libs/libigraph_la-gengraph_degree_sequence.o 
> .libs/libigraph_la-gengraph_graph_molloy_hash.o 
> .libs/libigraph_la-gengraph_graph_molloy_optimized.o 
> .libs/libigraph_la-gengraph_mr-connected.o 
> .libs/libigraph_la-gengraph_powerlaw.o .libs/libigraph_la-gengraph_random.o 
> .libs/libigraph_la-decomposition.o .libs/libigraph_la-bipartite.o 
> .libs/libigraph_la-drl_layout_3d.o .libs/libigraph_la-drl_graph_3d.o 
> .libs/libigraph_la-DensityGrid_3d.o .libs/libigraph_la-foreign-dl-parser.o 
> .libs/libigraph_la-foreign-dl-lexer.o .libs/libigraph_la-cs_add.o 
> .libs/libigraph_la-cs_happly.o .libs/libigraph_la-cs_pvec.o 
> .libs/libigraph_la-cs_amd.o .libs/libigraph_la-cs_h
> ouse.o .libs/libigraph_la-cs_qr.o .libs/libigraph_la-cs_chol.o 
> .libs/libigraph_la-cs_ipvec.o .libs/libigraph_la-cs_qrsol.o 
> .libs/libigraph_la-cs_cholsol.o .libs/libigraph_la-cs_leaf.o 
> .libs/libigraph_la-cs_randperm.o .libs/libigraph_la-cs_compress.o 
> .libs/libigraph_la-cs_load.o .libs/libigraph_la-cs_reach.o 
> .libs/libigraph_la-cs_counts.o .libs/libigraph_la-cs_lsolve.o 
> .libs/libigraph_la-cs_scatter.o .libs/libigraph_la-cs_cumsum.o 
> .libs/libigraph_la-cs_ltsolve.o .libs/libigraph_la-cs_scc.o 
> .libs/libigraph_la-cs_dfs.o .libs/libigraph_la-cs_lu.o 
> .libs/libigraph_la-cs_schol.o .libs/libigraph_la-cs_dmperm.o 
> .libs/libigraph_la-cs_lusol.o .libs/libigraph_la-cs_spsolve.o 
> .libs/libigraph_la-cs_droptol.o .libs/libigraph_la-cs_malloc.o 
> .libs/libigraph_la-cs_sqr.o .libs/libigraph_la-cs_dropzeros.o 
> .libs/libigraph_la-cs_maxtrans.o .libs/libigraph_la-cs_symperm.o 
> .libs/libigraph_la-cs_dupl.o .libs/libigraph_la-cs_multiply.o 
> .libs/libigraph_la-cs_tdfs.o .libs/libigraph_la-cs_entry.o .libs/
> libigraph_la-cs_norm.o .libs/libigraph_la-cs_transpose.o 
> .libs/libigraph_la-cs_ereach.o .libs/libigraph_la-cs_permute.o 
> .libs/libigraph_la-cs_updown.o .libs/libigraph_la-cs_etree.o 
> .libs/libigraph_la-cs_pinv.o .libs/libigraph_la-cs_usolve.o 
> .libs/libigraph_la-cs_fkeep.o .libs/libigraph_la-cs_post.o 
> .libs/libigraph_la-cs_util.o .libs/libigraph_la-cs_gaxpy.o 
> .libs/libigraph_la-cs_print.o .libs/libigraph_la-cs_utsolve.o 
> .libs/libigraph_la-sparsemat.o .libs/libigraph_la-mixing.o 
> .libs/libigraph_la-bigint.o .libs/libigraph_la-bignum.o 
> .libs/libigraph_la-version.o .libs/libigraph_la-optimal_modularity.o 
> .libs/libigraph_la-igraph_fixed_vectorlist.o .libs/libigraph_la-separators.o 
> .libs/libigraph_la-igraph_marked_queue.o .libs/libigraph_la-igraph_estack.o 
> .libs/libigraph_la-st-cuts.o .libs/libigraph_la-cohesive_blocks.o 
> .libs/libigraph_la-statusbar.o .libs/libigraph_la-lapack.o 
> .libs/libigraph_la-complex.o .libs/libigraph_la-eigen.o 
> .libs/libigraph_la-feedback_arc_set.o .libs/libigr
> aph_la-sugiyama.o .libs/libigraph_la-glpk_support.o 
> .libs/libigraph_la-igraph_hrg_types.o .libs/libigraph_la-igraph_hrg.o 
> .libs/libigraph_la-distances.o .libs/libigraph_la-fortran_intrinsics.o 
> .libs/libigraph_la-matching.o .libs/libigraph_la-scg.o 
> .libs/libigraph_la-scg_approximate_methods.o 
> .libs/libigraph_la-scg_exact_scg.o .libs/libigraph_la-scg_kmeans.o 
> .libs/libigraph_la-scg_utils.o .libs/libigraph_la-scg_optimal_method.o 
> .libs/libigraph_la-qsort.o .libs/libigraph_la-qsort_r.o 
> .libs/libigraph_la-types.o .libs/libigraph_la-hacks.o -Wl,--whole-archive 
> ./.libs/libf2c.a ./.libs/libblas.a ./.libs/liblapack.a ./.libs/libdlamch.a 
> ./.libs/libarpack.a ./.libs/libglpk.a ./.libs/libplfit.a 
> -Wl,--no-whole-archive -Wl,-rpath -Wl,/soft/python-2.7/ubuntuamd1/lib 
> -Wl,-rpath -Wl,/soft/python-2.7/ubuntuamd1/lib 
> -L/soft/python-2.7/ubuntuamd1/lib /soft/python-2.7/ubuntuamd1/lib/libxml2.so 
> -lz -lgmp -L/usr/lib/gcc/x86_64-linux-gnu/4.6 
> -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-li
> nux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib 
> -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu 
> -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm 
> -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o 
> /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -O2 
> -Wl,-rpath -Wl,-soname -Wl,libigraph.so.0 -o .libs/libigraph.so.0.0.0
> /usr/bin/ld: cannot find libigraph.so.0: No such file or directory
> collect2: ld returned 1 exit status
> make[3]: *** [libigraph.la (http://libigraph.la)] Error 1
> make[3]: Leaving directory `/home/staff01/mein/Downloads/igraph-0.6.5/src'
> make[2]: *** [all] Error 2
> make[2]: Leaving directory `/home/staff01/mein/Downloads/igraph-0.6.5/src'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/home/staff01/mein/Downloads/igraph-0.6.5'
> make: *** [all] Error 2
> 
> 
> -- 
> address@hidden (mailto:address@hidden)
> http://www.cs.umn.edu/~mein
> 
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> igraph-help mailing list
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