myexperiment-discuss
[Top][All Lists]
Advanced

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[Myexperiment-discuss] Re: Towards a cyberinfrastructure for the biologi


From: Kei Cheung
Subject: [Myexperiment-discuss] Re: Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges
Date: Wed, 20 Aug 2008 23:03:30 -0400
User-agent: Mozilla Thunderbird 1.0.7 (Windows/20050923)

Peter Ansell wrote:

----- "Marco Roos" <address@hidden> wrote:

From: "Marco Roos" <address@hidden>
To: "Matthias Samwald" <address@hidden>
Cc: "public-semweb-lifesci" <address@hidden>, address@hidden,
address@hidden
Sent: Wednesday, 20 August, 2008 8:11:36 PM GMT +10:00 Brisbane
Subject: Re: Towards a cyberinfrastructure for the biological sciences: 
progress,   visions and challenges

Hi Matthias,

Interesting remarks. You'll be interested to know that 'webifying'
workflows (in various ways) is one of the prime interests of people at
myGrid and myExperiment. My personal opinion, a bit from a biologist's
perspective, is that we should be careful not to loose some aspects of
workflows in our enthusiasm about Web 2.0 and wiki approaches. One of
my main reasons for liking workflows is that they represent a
publishable and reproducible 'protocol' similar to a wet laboratory
protocol. This should not be volatile in any way, which Web2.0 or wiki
approaches easily can be.

Wiki's explicitly allow for a permanent link to a particular version of 
something. Hopefully an implementation of a wiki-like workflow editor online, 
will have similar characteristics so that you can still use a particular 
version to reproduce a past result if you need to, provided the web services 
still exist and haven't changed their interface ;-) It would also be nice to be 
able to get corrected versions via the wiki mechanism though and that would 
suit the Web 2.0 way, as opposed to publications to which corrections are hard 
to make.

If some journals are requiring raw data (e.g., microarray data) to be submitted to a public data repository, I wonder if workflows that are used to analyze the data should also be submitted to a public workflow repository.

Cheers,

-Kei




reply via email to

[Prev in Thread] Current Thread [Next in Thread]