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29/54: gnu: r-affyio: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
29/54: gnu: r-affyio: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:13 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 96ae9822c4c641587ea151e6a58eddbdb6e66590
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:26:01 2021 +0200
gnu: r-affyio: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-affyio): Move from here...
* gnu/packages/bioconductor.scm (r-affyio): ...to here.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 24 ------------------------
2 files changed, 24 insertions(+), 24 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 659c8f5..9faf702 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1899,6 +1899,30 @@ problems in CEL-level data to help evaluate performance
of quality metrics.")
to streamline the more common analyses that a Biostatistician might see.")
(license license:artistic2.0)))
+(define-public r-affyio
+ (package
+ (name "r-affyio")
+ (version "1.60.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "affyio" version))
+ (sha256
+ (base32
+ "14xnzrxrvgxgixjhq5a9fdgcmrxam2j74hwidkc9if92ffv6s83h"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-zlibbioc" ,r-zlibbioc)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://github.com/bmbolstad/affyio")
+ (synopsis "Tools for parsing Affymetrix data files")
+ (description
+ "This package provides routines for parsing Affymetrix data files based
+upon file format information. The primary focus is on accessing the CEL and
+CDF file formats.")
+ (license license:lgpl2.0+)))
+
(define-public r-affxparser
(package
(name "r-affxparser")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9e7bae2..0dd362c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9108,30 +9108,6 @@ proteowizard library for mzML and mzIdentML. The netCDF
reading code has
previously been used in XCMS.")
(license license:artistic2.0)))
-(define-public r-affyio
- (package
- (name "r-affyio")
- (version "1.60.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "affyio" version))
- (sha256
- (base32
- "14xnzrxrvgxgixjhq5a9fdgcmrxam2j74hwidkc9if92ffv6s83h"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-zlibbioc" ,r-zlibbioc)))
- (inputs
- `(("zlib" ,zlib)))
- (home-page "https://github.com/bmbolstad/affyio")
- (synopsis "Tools for parsing Affymetrix data files")
- (description
- "This package provides routines for parsing Affymetrix data files based
-upon file format information. The primary focus is on accessing the CEL and
-CDF file formats.")
- (license license:lgpl2.0+)))
-
(define-public r-vsn
(package
(name "r-vsn")
- 06/54: gnu: r-msnid: Move to (gnu packages bioconductor)., (continued)
- 06/54: gnu: r-msnid: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 07/54: gnu: r-msnbase: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 05/54: gnu: r-bsgenome: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 03/54: gnu: r-genomicfeatures: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 01/54: gnu: r-genomicalignments: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 12/54: gnu: r-genomation: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 10/54: gnu: r-seqpattern: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 15/54: gnu: r-mzid: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 18/54: gnu: r-edaseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 17/54: gnu: r-deseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 29/54: gnu: r-affyio: Move to (gnu packages bioconductor).,
guix-commits <=
- 21/54: gnu: r-fastseg: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 25/54: gnu: r-complexheatmap: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 20/54: gnu: r-annotationhub: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 22/54: gnu: r-affy: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 32/54: gnu: r-ensembldb: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 33/54: gnu: r-mzr: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 34/54: gnu: r-protgenerics: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 43/54: gnu: r-tximport: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 28/54: gnu: r-organismdbi: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 42/54: gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31