[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
36/54: gnu: r-motifrg: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
36/54: gnu: r-motifrg: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:15 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit c2a18aee16a59330a005bf6818df733a2f56c425
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:26:08 2021 +0200
gnu: r-motifrg: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-motifrg): Move from here...
* gnu/packages/bioconductor.scm (r-motifrg): ...to here.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 27 ---------------------------
2 files changed, 27 insertions(+), 27 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a4d99dd..c9f72c5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3129,6 +3129,33 @@ and the assessment of differential expression. The
analysis methods apply to
different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(license license:gpl2+)))
+(define-public r-motifrg
+ (package
+ (name "r-motifrg")
+ (version "1.31.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "motifRG" version))
+ (sha256
+ (base32
+ "1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
+ (properties `((upstream-name . "motifRG")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
+ ("r-iranges" ,r-iranges)
+ ("r-seqlogo" ,r-seqlogo)
+ ("r-xvector" ,r-xvector)))
+ (home-page "https://bioconductor.org/packages/motifRG")
+ (synopsis "Discover motifs in high throughput sequencing data")
+ (description
+ "This package provides tools for discriminative motif discovery in high
+throughput genetic sequencing data sets using regression methods.")
+ (license license:artistic2.0)))
+
(define-public r-msnbase
(package
(name "r-msnbase")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cb0fe50..8f011f0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8046,33 +8046,6 @@ plots the corresponding sequence logo as introduced by
Schneider and
Stephens (1990).")
(license license:lgpl2.0+)))
-(define-public r-motifrg
- (package
- (name "r-motifrg")
- (version "1.31.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "motifRG" version))
- (sha256
- (base32
- "1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
- (properties `((upstream-name . "motifRG")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biostrings" ,r-biostrings)
- ("r-bsgenome" ,r-bsgenome)
- ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
- ("r-iranges" ,r-iranges)
- ("r-seqlogo" ,r-seqlogo)
- ("r-xvector" ,r-xvector)))
- (home-page "https://bioconductor.org/packages/motifRG")
- (synopsis "Discover motifs in high throughput sequencing data")
- (description
- "This package provides tools for discriminative motif discovery in high
-throughput genetic sequencing data sets using regression methods.")
- (license license:artistic2.0)))
-
(define-public r-zlibbioc
(package
(name "r-zlibbioc")
- 43/54: gnu: r-tximport: Move to (gnu packages bioconductor)., (continued)
- 43/54: gnu: r-tximport: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 28/54: gnu: r-organismdbi: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 42/54: gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 46/54: gnu: r-rhdf5: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 48/54: gnu: r-copyhelper: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 51/54: gnu: r-phantompeakqualtools: Let-bind commit, set revision to 1., guix-commits, 2021/05/31
- 24/54: gnu: r-gage: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 26/54: gnu: r-genomicfiles: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 27/54: gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 31/54: gnu: r-biovizbase: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 36/54: gnu: r-motifrg: Move to (gnu packages bioconductor).,
guix-commits <=
- 39/54: gnu: r-rhtslib: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 23/54: gnu: r-keggrest: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 30/54: gnu: r-vsn: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 35/54: gnu: r-sva: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 38/54: gnu: r-zlibbioc: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 41/54: gnu: r-rcas: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 44/54: gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 47/54: gnu: r-chipseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 45/54: gnu: r-annotationfilter: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 49/54: gnu: r-copywriter: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31