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18/30: gnu: Add r-gqtlstats.
From: |
Ricardo Wurmus |
Subject: |
18/30: gnu: Add r-gqtlstats. |
Date: |
Tue, 7 Nov 2017 17:32:58 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 794ff347a9ce8e5766994513b738941f9028f98a
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 16:46:03 2017 +0100
gnu: Add r-gqtlstats.
* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
---
gnu/packages/bioinformatics.scm | 54 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 54 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index af2cefa..8285350 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9980,6 +9980,60 @@ handling of existing population-level data for the
purpose of flexibly
defining LD blocks.")
(license license:artistic2.0)))
+(define-public r-gqtlstats
+ (package
+ (name "r-gqtlstats")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "gQTLstats" version))
+ (sha256
+ (base32
+ "1cbdqawxzgna8rrgj3siph5sw4d2pb57qc0gn6ibfkhyk45f8gdv"))))
+ (properties `((upstream-name . "gQTLstats")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-batchjobs" ,r-batchjobs)
+ ("r-bbmisc" ,r-bbmisc)
+ ("r-beeswarm" ,r-beeswarm)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-doparallel" ,r-doparallel)
+ ("r-dplyr" ,r-dplyr)
+ ("r-erma" ,r-erma)
+ ("r-ffbase" ,r-ffbase)
+ ("r-foreach" ,r-foreach)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggbeeswarm" ,r-ggbeeswarm)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gqtlbase" ,r-gqtlbase)
+ ("r-hardyweinberg" ,r-hardyweinberg)
+ ("r-iranges" ,r-iranges)
+ ("r-ldblock" ,r-ldblock)
+ ("r-limma" ,r-limma)
+ ("r-mgcv" ,r-mgcv)
+ ("r-plotly" ,r-plotly)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-shiny" ,r-shiny)
+ ("r-snpstats" ,r-snpstats)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/gQTLstats")
+ (synopsis "Computationally efficient analysis for eQTL and allied studies")
+ (description
+ "This package provides tools for the computationally efficient analysis
+of @dfn{quantitative trait loci} (QTL) data, including eQTL, mQTL, dsQTL, etc.
+The software in this package aims to support refinements and functional
+interpretation of members of a collection of association statistics on a
+family of feature/genome hypotheses.")
+ (license license:artistic2.0)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
- 10/30: gnu: Add r-gqtlbase., (continued)
- 10/30: gnu: Add r-gqtlbase., Ricardo Wurmus, 2017/11/07
- 11/30: gnu: Add r-snpstats., Ricardo Wurmus, 2017/11/07
- 08/30: gnu: Add r-ggbio., Ricardo Wurmus, 2017/11/07
- 09/30: gnu: Add r-gprofiler., Ricardo Wurmus, 2017/11/07
- 16/30: gnu: Add r-mice., Ricardo Wurmus, 2017/11/07
- 26/30: gnu: Add r-rsofia., Ricardo Wurmus, 2017/11/07
- 13/30: gnu: Add r-homo-sapiens., Ricardo Wurmus, 2017/11/07
- 15/30: gnu: Add r-ldblock., Ricardo Wurmus, 2017/11/07
- 12/30: gnu: Add r-org-hs-eg-db., Ricardo Wurmus, 2017/11/07
- 29/30: gnu: r-prabclus: Update description., Ricardo Wurmus, 2017/11/07
- 18/30: gnu: Add r-gqtlstats.,
Ricardo Wurmus <=
- 19/30: gnu: Add r-gviz., Ricardo Wurmus, 2017/11/07
- 24/30: gnu: Add r-fithic., Ricardo Wurmus, 2017/11/07
- 25/30: gnu: Add r-hitc., Ricardo Wurmus, 2017/11/07
- 23/30: gnu: Add r-sushi., Ricardo Wurmus, 2017/11/07
- 14/30: gnu: Add r-erma., Ricardo Wurmus, 2017/11/07
- 17/30: gnu: Add r-hardyweinberg., Ricardo Wurmus, 2017/11/07
- 21/30: gnu: Add r-sm., Ricardo Wurmus, 2017/11/07
- 30/30: gnu: Add glusterfs., Ricardo Wurmus, 2017/11/07
- 27/30: gnu: Add r-bbmle., Ricardo Wurmus, 2017/11/07
- 28/30: gnu: r-fdrtool: Update description., Ricardo Wurmus, 2017/11/07